Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV167_RS09940 Genome accession   NZ_CP031329
Coordinates   1704851..1705315 (-) Length   154 a.a.
NCBI ID   WP_025461773.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1699851..1710315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS09920 rfbC 1700563..1701120 (+) 558 WP_002250929.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  DV167_RS09925 - 1701164..1703182 (-) 2019 WP_002250928.1 oligopeptide transporter, OPT family -
  DV167_RS09930 dnaJ 1703378..1704499 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  DV167_RS13770 - 1704581..1704739 (-) 159 WP_002215272.1 hypothetical protein -
  DV167_RS09940 comE 1704851..1705315 (-) 465 WP_025461773.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16531.78 Da        Isoelectric Point: 10.8645

>NTDB_id=305798 DV167_RS09940 WP_025461773.1 1704851..1705315(-) (comE) [Neisseria meningitidis strain M22425]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305798 DV167_RS09940 WP_025461773.1 1704851..1705315(-) (comE) [Neisseria meningitidis strain M22425]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCC
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment