Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   DV167_RS08695 Genome accession   NZ_CP031329
Coordinates   1484405..1485103 (-) Length   232 a.a.
NCBI ID   WP_002215673.1    Uniprot ID   A0A0U1RKJ4
Organism   Neisseria meningitidis strain M22425     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1479405..1490103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS08680 - 1479619..1480761 (-) 1143 WP_002251023.1 peptidylprolyl isomerase -
  DV167_RS08685 - 1480866..1483274 (-) 2409 WP_002251022.1 LPS-assembly protein LptD -
  DV167_RS08690 amgK 1483344..1484348 (+) 1005 WP_002251021.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DV167_RS08695 dsbA1 1484405..1485103 (-) 699 WP_002215673.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV167_RS08705 murJ 1485321..1486859 (+) 1539 WP_002251020.1 murein biosynthesis integral membrane protein MurJ -
  DV167_RS08710 - 1486991..1487947 (+) 957 WP_002251019.1 YheT family hydrolase -
  DV167_RS08715 trpC 1487998..1488780 (+) 783 WP_002251018.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25245.84 Da        Isoelectric Point: 5.6016

>NTDB_id=305796 DV167_RS08695 WP_002215673.1 1484405..1485103(-) (dsbA1) [Neisseria meningitidis strain M22425]
MKSKHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAH

Nucleotide


Download         Length: 699 bp        

>NTDB_id=305796 DV167_RS08695 WP_002215673.1 1484405..1485103(-) (dsbA1) [Neisseria meningitidis strain M22425]
ATGAAATCCAAACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCACTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACTGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCACTAA

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0U1RKJ4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

98.707

100

0.987

  dsbA2 Neisseria meningitidis MC58

76.882

80.172

0.616


Multiple sequence alignment