Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV167_RS05960 Genome accession   NZ_CP031329
Coordinates   1011496..1012299 (+) Length   267 a.a.
NCBI ID   WP_033911979.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1006496..1017299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS05935 lptE 1007356..1007835 (-) 480 WP_002251202.1 LPS assembly lipoprotein LptE -
  DV167_RS05940 pgeF 1007887..1008666 (-) 780 WP_002222768.1 peptidoglycan editing factor PgeF -
  DV167_RS05950 - 1009273..1010220 (+) 948 WP_002251201.1 bile acid:sodium symporter family protein -
  DV167_RS05955 rluD 1010373..1011497 (-) 1125 WP_002251200.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV167_RS05960 comL 1011496..1012299 (+) 804 WP_033911979.1 outer membrane protein assembly factor BamD Machinery gene
  DV167_RS05965 comA 1012357..1014576 (-) 2220 WP_157795709.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30822.86 Da        Isoelectric Point: 8.9351

>NTDB_id=305784 DV167_RS05960 WP_033911979.1 1011496..1012299(+) (comL) [Neisseria meningitidis strain M22425]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMIKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=305784 DV167_RS05960 WP_033911979.1 1011496..1012299(+) (comL) [Neisseria meningitidis strain M22425]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTATACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGATCCGAAAGCCAACCGCGAAGCGTATCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGATCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment