Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV167_RS00385 Genome accession   NZ_CP031329
Coordinates   72856..73320 (+) Length   154 a.a.
NCBI ID   WP_025461773.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 67856..78320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS00385 comE 72856..73320 (+) 465 WP_025461773.1 ComEA family DNA-binding protein Machinery gene
  DV167_RS00390 - 73251..73871 (-) 621 WP_002251458.1 HK97 family phage prohead protease -
  DV167_RS00395 - 73983..74576 (-) 594 WP_002218492.1 hypothetical protein -
  DV167_RS00400 prmB 74721..75620 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DV167_RS00410 - 75901..76638 (+) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  DV167_RS00415 - 76764..77036 (+) 273 WP_002218494.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16531.78 Da        Isoelectric Point: 10.8645

>NTDB_id=305767 DV167_RS00385 WP_025461773.1 72856..73320(+) (comE) [Neisseria meningitidis strain M22425]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305767 DV167_RS00385 WP_025461773.1 72856..73320(+) (comE) [Neisseria meningitidis strain M22425]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCC
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment