Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   DV144_RS14310 Genome accession   NZ_CP031328
Coordinates   380840..380965 (+) Length   41 a.a.
NCBI ID   WP_324186162.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 375840..385965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS02340 pilA 377082..378347 (+) 1266 WP_002238541.1 signal recognition particle-docking protein FtsY Machinery gene
  DV144_RS02355 - 379136..379420 (+) 285 WP_002216166.1 GIY-YIG nuclease family protein -
  DV144_RS14310 pilC 380840..380965 (+) 126 WP_324186162.1 hypothetical protein Machinery gene
  DV144_RS02375 pilC 380938..384000 (+) 3063 Protein_381 PilC family type IV pilus tip adhesin -

Sequence


Protein


Download         Length: 41 a.a.        Molecular weight: 4830.75 Da        Isoelectric Point: 12.8142

>NTDB_id=305765 DV144_RS14310 WP_324186162.1 380840..380965(+) (pilC) [Neisseria meningitidis strain M18755]
MNKTWKRQVFRHTVLYTAILMFSHTGGGGGRRKRKRINTLL

Nucleotide


Download         Length: 126 bp        

>NTDB_id=305765 DV144_RS14310 WP_324186162.1 380840..380965(+) (pilC) [Neisseria meningitidis strain M18755]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGTGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGCAGGCGCAAGCGCAAACGCATAAATACGCTATTGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

86.667

73.171

0.634


Multiple sequence alignment