Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   DV144_RS14220 Genome accession   NZ_CP031328
Coordinates   13289..13414 (+) Length   41 a.a.
NCBI ID   WP_275895500.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 8289..18414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS00045 hpaC 8736..9236 (-) 501 WP_101042283.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  DV144_RS00050 nadR 9351..9791 (-) 441 WP_115430663.1 MarR family adhesin repressor NadR -
  DV144_RS00060 - 10134..10643 (-) 510 WP_002249078.1 protein disulfide oxidoreductase -
  DV144_RS00070 apbC 11013..12092 (+) 1080 WP_101126242.1 iron-sulfur cluster carrier protein ApbC -
  DV144_RS14220 pilC 13289..13414 (+) 126 WP_275895500.1 hypothetical protein Machinery gene
  DV144_RS00080 pilC 13449..16559 (+) 3111 WP_115430664.1 PilC family type IV pilus tip adhesin Machinery gene

Sequence


Protein


Download         Length: 41 a.a.        Molecular weight: 4613.48 Da        Isoelectric Point: 12.8111

>NTDB_id=305764 DV144_RS14220 WP_275895500.1 13289..13414(+) (pilC) [Neisseria meningitidis strain M18755]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGRRRKPVNTLLS

Nucleotide


Download         Length: 126 bp        

>NTDB_id=305764 DV144_RS14220 WP_275895500.1 13289..13414(+) (pilC) [Neisseria meningitidis strain M18755]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCGCAGGCGCAAACCCGTCAATACGCTATTATCATGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

93.333

73.171

0.683


Multiple sequence alignment