Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV144_RS13380 Genome accession   NZ_CP031328
Coordinates   1003768..1004232 (+) Length   154 a.a.
NCBI ID   WP_162818857.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1005146..1006111 1003768..1004232 flank 914


Gene organization within MGE regions


Location: 1003768..1006111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS13380 comE 1003768..1004232 (+) 465 WP_162818857.1 ComEA family DNA-binding protein Machinery gene
  DV144_RS06085 - 1004163..1004783 (-) 621 WP_115430763.1 HK97 family phage prohead protease -
  DV144_RS14330 - 1004895..1005134 (-) 240 WP_123231621.1 hypothetical protein -
  DV144_RS06090 - 1005146..1006111 (+) 966 WP_002221026.1 IS30-like element IS1655 family transposase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16606.87 Da        Isoelectric Point: 10.8773

>NTDB_id=305762 DV144_RS13380 WP_162818857.1 1003768..1004232(+) (comE) [Neisseria meningitidis strain M18755]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305762 DV144_RS13380 WP_162818857.1 1003768..1004232(+) (comE) [Neisseria meningitidis strain M18755]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGTCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCACCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment