Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   DV144_RS03820 Genome accession   NZ_CP031328
Coordinates   628532..629230 (+) Length   232 a.a.
NCBI ID   WP_076612544.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 623532..634230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS03800 trpC 624855..625637 (-) 783 WP_101092737.1 indole-3-glycerol phosphate synthase TrpC -
  DV144_RS03805 - 625688..626644 (-) 957 WP_101092735.1 alpha/beta fold hydrolase -
  DV144_RS03810 murJ 626776..628314 (-) 1539 WP_101092733.1 murein biosynthesis integral membrane protein MurJ -
  DV144_RS03820 dsbA1 628532..629230 (+) 699 WP_076612544.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV144_RS03825 amgK 629287..630291 (-) 1005 WP_076612545.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DV144_RS03830 - 630361..632769 (+) 2409 WP_162818861.1 LPS-assembly protein LptD -
  DV144_RS03835 - 632874..633881 (+) 1008 WP_021439257.1 peptidylprolyl isomerase -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25255.83 Da        Isoelectric Point: 5.1392

>NTDB_id=305725 DV144_RS03820 WP_076612544.1 628532..629230(+) (dsbA1) [Neisseria meningitidis strain M18755]
MKSRQLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=305725 DV144_RS03820 WP_076612544.1 628532..629230(+) (dsbA1) [Neisseria meningitidis strain M18755]
ATGAAATCCAGACAACTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991

  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621


Multiple sequence alignment