Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV155_RS06165 Genome accession   NZ_CP031326
Coordinates   1058750..1059214 (-) Length   154 a.a.
NCBI ID   WP_162818848.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21374     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053750..1064214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV155_RS06150 rfbC 1054545..1055102 (+) 558 WP_002224368.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  DV155_RS06155 - 1055146..1057164 (-) 2019 WP_002224367.1 oligopeptide transporter, OPT family -
  DV155_RS06160 dnaJ 1057360..1058481 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  DV155_RS06165 comE 1058750..1059214 (-) 465 WP_162818848.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16581.78 Da        Isoelectric Point: 10.8773

>NTDB_id=305692 DV155_RS06165 WP_162818848.1 1058750..1059214(-) (comE) [Neisseria meningitidis strain M21374]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKSVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305692 DV155_RS06165 WP_162818848.1 1058750..1059214(-) (comE) [Neisseria meningitidis strain M21374]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAATCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment