Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV115_RS09260 Genome accession   NZ_CP031325
Coordinates   1663619..1664422 (-) Length   267 a.a.
NCBI ID   WP_003753217.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1658619..1669422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS09245 trpB 1659211..1660413 (+) 1203 WP_003753226.1 tryptophan synthase subunit beta -
  DV115_RS09250 - 1660506..1660847 (+) 342 WP_003753224.1 hypothetical protein -
  DV115_RS09255 - 1661178..1663396 (+) 2219 Protein_1589 DNA internalization-related competence protein ComEC/Rec2 -
  DV115_RS09260 comL 1663619..1664422 (-) 804 WP_003753217.1 outer membrane protein assembly factor BamD Machinery gene
  DV115_RS09265 rluD 1664421..1665545 (+) 1125 WP_003753215.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV115_RS09270 - 1665698..1666645 (-) 948 WP_002219577.1 bile acid:sodium symporter family protein -
  DV115_RS09275 - 1666722..1666946 (-) 225 WP_301005469.1 hypothetical protein -
  DV115_RS09280 pgeF 1667099..1667878 (+) 780 WP_003753209.1 peptidoglycan editing factor PgeF -
  DV115_RS09285 lptE 1667930..1668409 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  DV115_RS09290 holA 1668411..1669409 (+) 999 WP_003753207.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30823.84 Da        Isoelectric Point: 8.5650

>NTDB_id=305657 DV115_RS09260 WP_003753217.1 1663619..1664422(-) (comL) [Neisseria polysaccharea strain M18661]
MKKFLLTVSLGLALSACATKGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHAQQSQLDTAY
AYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMIKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTHRV
LEANFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=305657 DV115_RS09260 WP_003753217.1 1663619..1664422(-) (comL) [Neisseria polysaccharea strain M18661]
ATGAAAAAATTTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACCAAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCTACCAGCCGCCACGCCCAGCAATCCCAACTGGATACGGCATAC
GCCTACTATAAAGATGATGAGAAGGATAAGGCGCTGGCCGCCATTGACCGCTTCCGCCGACTTCACCCTCAACACCCGAA
TATGGATTACGCGCTGTATCTGCGCGGTTTGGTACTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGATCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTAGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAATTGGACAAGCCCCAGCTTGCCGCCGACACACACCGCGTT
TTGGAAGCCAACTTTCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

96.629

100

0.966
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment