Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DV115_RS06235 Genome accession   NZ_CP031325
Coordinates   1125075..1125773 (+) Length   232 a.a.
NCBI ID   WP_003750202.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1120075..1130773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS06215 trpC 1121398..1122180 (-) 783 WP_025456623.1 indole-3-glycerol phosphate synthase TrpC -
  DV115_RS06220 - 1122230..1123186 (-) 957 WP_003750210.1 YheT family hydrolase -
  DV115_RS06225 murJ 1123319..1124857 (-) 1539 WP_025456622.1 murein biosynthesis integral membrane protein MurJ -
  DV115_RS06235 dsbA1 1125075..1125773 (+) 699 WP_003750202.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV115_RS06240 amgK 1125830..1126834 (-) 1005 WP_003750200.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DV115_RS06245 - 1126904..1129312 (+) 2409 WP_025456621.1 LPS-assembly protein LptD -
  DV115_RS06250 - 1129411..1130409 (+) 999 WP_003750194.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25259.87 Da        Isoelectric Point: 5.6310

>NTDB_id=305644 DV115_RS06235 WP_003750202.1 1125075..1125773(+) (dsbA1) [Neisseria polysaccharea strain M18661]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=305644 DV115_RS06235 WP_003750202.1 1125075..1125773(+) (dsbA1) [Neisseria polysaccharea strain M18661]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCACCTGCTGCTTCGGCAGCCGCCGCCCCCGCCGGACTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTCCTTGAGTTTTTCGGCTATTTCTGCCCGCACTGCGCCCAC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAGCATGTCGTCTGGCAGAA
AGAAATGCTGCCGCTTGCCCGCCTTGCCGCTGCCGTCGATATGGCTGCCGCCGAAAGTAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAATCAGAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCTCCCGAAAGCCAGGCGCGTGCCGATAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGCACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.72

81.466

0.625

Multiple sequence alignment