Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EXA02_RS09390 Genome accession   NZ_CP035841
Coordinates   1903714..1904190 (+) Length   158 a.a.
NCBI ID   WP_001384108.1    Uniprot ID   A7ZRC3
Organism   Escherichia coli strain TW10722     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898714..1909190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA02_RS28290 - 1900163..1900336 (+) 174 WP_228355565.1 hypothetical protein -
  EXA02_RS09365 - 1900462..1901001 (+) 540 WP_001104025.1 DUF4339 domain-containing protein -
  EXA02_RS09370 - 1901271..1901684 (+) 414 WP_000789533.1 hypothetical protein -
  EXA02_RS09375 - 1901782..1902005 (+) 224 Protein_1854 DUF905 family protein -
  EXA02_RS09380 - 1902105..1902923 (+) 819 WP_001234625.1 DUF932 domain-containing protein -
  EXA02_RS09385 - 1903225..1903698 (+) 474 WP_000855059.1 antirestriction protein -
  EXA02_RS09390 radC 1903714..1904190 (+) 477 WP_001384108.1 RadC family protein Machinery gene
  EXA02_RS09395 - 1904277..1904498 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  EXA02_RS09400 - 1904578..1904946 (+) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EXA02_RS09405 cbtA 1905036..1905413 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EXA02_RS09410 - 1905410..1905607 (+) 198 Protein_1861 DUF5983 family protein -
  EXA02_RS09415 - 1905635..1905832 (+) 198 WP_085949090.1 DUF957 domain-containing protein -
  EXA02_RS09420 - 1905917..1906759 (+) 843 WP_001280493.1 DUF4942 domain-containing protein -
  EXA02_RS28780 - 1907134..1907248 (+) 115 Protein_1864 integrase -
  EXA02_RS09425 cadC 1907508..1909046 (+) 1539 WP_001187182.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=305627 EXA02_RS09390 WP_001384108.1 1903714..1904190(+) (radC) [Escherichia coli strain TW10722]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=305627 EXA02_RS09390 WP_001384108.1 1903714..1904190(+) (radC) [Escherichia coli strain TW10722]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment