Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV175_RS13260 Genome accession   NZ_CP031324
Coordinates   2250076..2250522 (-) Length   148 a.a.
NCBI ID   WP_050583883.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2245076..2255522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS13230 - 2246361..2246633 (-) 273 WP_002212673.1 ACT domain-containing protein -
  DV175_RS13235 - 2246758..2247495 (-) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  DV175_RS13245 prmB 2247776..2248675 (-) 900 WP_002236035.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DV175_RS13250 - 2248820..2249413 (+) 594 WP_002220247.1 hypothetical protein -
  DV175_RS13255 - 2249525..2250145 (+) 621 WP_002238222.1 HK97 family phage prohead protease -
  DV175_RS13260 comE 2250076..2250522 (-) 447 WP_050583883.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15815.85 Da        Isoelectric Point: 10.9325

>NTDB_id=305627 DV175_RS13260 WP_050583883.1 2250076..2250522(-) (comE) [Neisseria meningitidis strain M23347]
MSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINAASQQEL
EALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATPAVKK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=305627 DV175_RS13260 WP_050583883.1 2250076..2250522(-) (comE) [Neisseria meningitidis strain M23347]
ATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTTGAAACTTTGGGATATTCA
TTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAAAAACCATGAAGAAAATGT
TCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGTTG
GAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAACGGTGCGTTCAAGTCTGT
AGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGGCTTCGGTCGGTGCGCCCG
CACCCAAAGCCCCCGCCAAACCGGCAACGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

82.432

0.757
  comE Neisseria gonorrhoeae MS11

91.803

82.432

0.757
  comE Neisseria gonorrhoeae MS11

91.803

82.432

0.757
  comE Neisseria gonorrhoeae MS11

91.803

82.432

0.757

Multiple sequence alignment