Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV175_RS07610 Genome accession   NZ_CP031324
Coordinates   1288692..1289495 (-) Length   267 a.a.
NCBI ID   WP_002217677.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1283692..1294495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS07605 comA 1286415..1288634 (+) 2220 WP_153065341.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV175_RS07610 comL 1288692..1289495 (-) 804 WP_002217677.1 outer membrane protein assembly factor BamD Machinery gene
  DV175_RS07615 rluD 1289494..1290618 (+) 1125 WP_002237791.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV175_RS13750 - 1290603..1290755 (-) 153 WP_162818896.1 hypothetical protein -
  DV175_RS07620 - 1290771..1291720 (-) 950 Protein_1238 bile acid:sodium symporter family protein -
  DV175_RS07630 pgeF 1292279..1293058 (+) 780 WP_002233699.1 peptidoglycan editing factor PgeF -
  DV175_RS07635 lptE 1293110..1293589 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30790.80 Da        Isoelectric Point: 8.9351

>NTDB_id=305610 DV175_RS07610 WP_002217677.1 1288692..1289495(-) (comL) [Neisseria meningitidis strain M23347]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEISVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=305610 DV175_RS07610 WP_002217677.1 1288692..1289495(-) (comL) [Neisseria meningitidis strain M23347]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
TCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATATCGGTGGCGCGCTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCCTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment