Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EXA03_RS22190 Genome accession   NZ_CP035836
Coordinates   4531041..4531646 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WS1933D     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4526041..4536646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS26865 - 4526595..4526693 (+) 99 Protein_4361 hypothetical protein -
  EXA03_RS22160 rsmS 4526746..4526907 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EXA03_RS22165 priC 4526921..4527448 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  EXA03_RS22170 ybaN 4527518..4527895 (+) 378 WP_001188905.1 DUF454 family protein -
  EXA03_RS22175 apt 4528048..4528599 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EXA03_RS22180 dnaX 4528728..4530659 (+) 1932 WP_000122049.1 DNA polymerase III subunit gamma/tau -
  EXA03_RS22185 ybaB 4530712..4531041 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EXA03_RS22190 recR 4531041..4531646 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EXA03_RS22195 htpG 4531756..4533630 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EXA03_RS22200 adk 4533811..4534455 (+) 645 WP_001220233.1 adenylate kinase -
  EXA03_RS22205 hemH 4534587..4535549 (+) 963 WP_001250108.1 ferrochelatase -
  EXA03_RS22210 aes 4535524..4536492 (-) 969 WP_000801858.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=305602 EXA03_RS22190 WP_001195025.1 4531041..4531646(+) (recR) [Escherichia coli strain WS1933D]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=305602 EXA03_RS22190 WP_001195025.1 4531041..4531646(+) (recR) [Escherichia coli strain WS1933D]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCTGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment