Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   DV175_RS02000 Genome accession   NZ_CP031324
Coordinates   355719..356417 (-) Length   232 a.a.
NCBI ID   WP_002237582.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 350719..361417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS01985 - 350870..352075 (-) 1206 WP_115437359.1 peptidylprolyl isomerase -
  DV175_RS01990 - 352180..354588 (-) 2409 WP_025462636.1 LPS-assembly protein LptD -
  DV175_RS01995 amgK 354658..355662 (+) 1005 WP_002237583.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DV175_RS02000 dsbA1 355719..356417 (-) 699 WP_002237582.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV175_RS02010 murJ 356874..358412 (+) 1539 WP_002237581.1 murein biosynthesis integral membrane protein MurJ -
  DV175_RS14520 - 358416..358547 (+) 132 WP_255304562.1 hypothetical protein -
  DV175_RS02015 - 358544..359500 (+) 957 WP_002223341.1 YheT family hydrolase -
  DV175_RS02020 trpC 359550..360332 (+) 783 WP_002223340.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25264.84 Da        Isoelectric Point: 5.3490

>NTDB_id=305591 DV175_RS02000 WP_002237582.1 355719..356417(-) (dsbA1) [Neisseria meningitidis strain M23347]
MKSRQLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAH

Nucleotide


Download         Length: 699 bp        

>NTDB_id=305591 DV175_RS02000 WP_002237582.1 355719..356417(-) (dsbA1) [Neisseria meningitidis strain M23347]
ATGAAATCCAGACAACTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCACTAA

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

98.707

100

0.987

  dsbA2 Neisseria meningitidis MC58

76.882

80.172

0.616


Multiple sequence alignment