Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV175_RS01810 Genome accession   NZ_CP031324
Coordinates   316946..317392 (-) Length   148 a.a.
NCBI ID   WP_025462628.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 315686..316339 316946..317392 flank 607


Gene organization within MGE regions


Location: 315686..317392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS01800 - 315686..316339 (-) 654 WP_002244699.1 IS1595 family transposase -
  DV175_RS14285 - 316459..316917 (-) 459 WP_002237601.1 hypothetical protein -
  DV175_RS01810 comE 316946..317392 (-) 447 WP_025462628.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15857.88 Da        Isoelectric Point: 10.8359

>NTDB_id=305589 DV175_RS01810 WP_025462628.1 316946..317392(-) (comE) [Neisseria meningitidis strain M23347]
MSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINAASQQEL
EALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=305589 DV175_RS01810 WP_025462628.1 316946..317392(-) (comE) [Neisseria meningitidis strain M23347]
ATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTTGAAACTTTGGGATATTCA
TTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAAAAACCATGAAGAAAATGT
TCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGTTG
GAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAACGGTGCGTTCAAGTCTGT
AGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGGCTTCTGTCGGCGCGCCCG
CACCAAAAGGCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

82.432

0.77
  comE Neisseria gonorrhoeae MS11

93.443

82.432

0.77
  comE Neisseria gonorrhoeae MS11

93.443

82.432

0.77
  comE Neisseria gonorrhoeae MS11

93.443

82.432

0.77

Multiple sequence alignment