Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EXA03_RS09740 Genome accession   NZ_CP035836
Coordinates   1963170..1963907 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WS1933D     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1958170..1968907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA03_RS09725 clpC 1958624..1961197 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EXA03_RS09730 yfiH 1961327..1962058 (-) 732 WP_000040112.1 purine nucleoside phosphorylase YfiH -
  EXA03_RS09735 rluD 1962055..1963035 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EXA03_RS09740 comL 1963170..1963907 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EXA03_RS09745 raiA 1964178..1964519 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EXA03_RS09750 pheL 1964623..1964670 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EXA03_RS09755 pheA 1964769..1965929 (+) 1161 WP_000200139.1 bifunctional chorismate mutase/prephenate dehydratase -
  EXA03_RS09760 tyrA 1965972..1967093 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EXA03_RS09765 aroF 1967104..1968174 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EXA03_RS09770 yfiL 1968384..1968749 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=305545 EXA03_RS09740 WP_000197686.1 1963170..1963907(+) (comL) [Escherichia coli strain WS1933D]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=305545 EXA03_RS09740 WP_000197686.1 1963170..1963907(+) (comL) [Escherichia coli strain WS1933D]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment