Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EXA04_RS06530 Genome accession   NZ_CP035832
Coordinates   1319772..1320509 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 025542-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314772..1325509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA04_RS06500 yfiL 1314930..1315295 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  EXA04_RS06505 aroF 1315505..1316575 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EXA04_RS06510 tyrA 1316586..1317707 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EXA04_RS06515 pheA 1317750..1318910 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  EXA04_RS06520 pheL 1319009..1319056 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EXA04_RS06525 raiA 1319160..1319501 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EXA04_RS06530 comL 1319772..1320509 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EXA04_RS06535 rluD 1320644..1321624 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EXA04_RS06540 yfiH 1321621..1322352 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  EXA04_RS06545 clpC 1322482..1325055 (+) 2574 WP_216317248.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=305466 EXA04_RS06530 WP_000197686.1 1319772..1320509(-) (comL) [Escherichia coli strain 025542-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=305466 EXA04_RS06530 WP_000197686.1 1319772..1320509(-) (comL) [Escherichia coli strain 025542-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTACGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment