Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DWB95_RS08505 Genome accession   NZ_CP031280
Coordinates   1777554..1778123 (-) Length   189 a.a.
NCBI ID   WP_017637366.1    Uniprot ID   A0A653ZVU7
Organism   Staphylococcus pasteuri strain 3C     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772554..1783123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB95_RS08465 (DWB95_08490) - 1772833..1773384 (-) 552 WP_017638070.1 GNAT family N-acetyltransferase -
  DWB95_RS08470 (DWB95_08495) - 1773601..1773813 (+) 213 WP_017638069.1 TM2 domain-containing protein -
  DWB95_RS12790 - 1773917..1774018 (+) 102 WP_017638068.1 SAR1012 family small protein -
  DWB95_RS08475 (DWB95_08500) - 1774072..1774677 (-) 606 WP_117239350.1 FMN-binding negative transcriptional regulator -
  DWB95_RS08480 (DWB95_08505) - 1774694..1775203 (-) 510 WP_126567804.1 GNAT family N-acetyltransferase -
  DWB95_RS08485 (DWB95_08510) - 1775219..1775671 (-) 453 WP_070452237.1 MarR family winged helix-turn-helix transcriptional regulator -
  DWB95_RS08490 (DWB95_08515) - 1775974..1776330 (+) 357 WP_017638419.1 DoxX family protein -
  DWB95_RS12795 - 1776400..1776534 (+) 135 WP_256219674.1 hypothetical protein -
  DWB95_RS08505 (DWB95_08530) comK/comK1 1777554..1778123 (-) 570 WP_017637366.1 competence protein ComK Regulator
  DWB95_RS08510 (DWB95_08535) - 1778341..1778559 (+) 219 WP_017637367.1 IDEAL domain-containing protein -
  DWB95_RS08515 (DWB95_08540) - 1778638..1779624 (-) 987 WP_017637368.1 lipoate--protein ligase -
  DWB95_RS08520 (DWB95_08545) - 1779828..1780013 (+) 186 WP_002450747.1 DUF2187 family protein -
  DWB95_RS08525 (DWB95_08550) - 1780019..1780621 (+) 603 WP_017637369.1 CPBP family glutamic-type intramembrane protease -
  DWB95_RS08530 (DWB95_08555) - 1780778..1782286 (-) 1509 WP_154874570.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22439.67 Da        Isoelectric Point: 9.4950

>NTDB_id=305431 DWB95_RS08505 WP_017637366.1 1777554..1778123(-) (comK/comK1) [Staphylococcus pasteuri strain 3C]
MTTQSIYVIRKGDMVIRPNYDENNQQNGSEILRYDKSIIQSPFKVQKIIERSCKFYGNNYLSKKAETNRITGISSKPPIL
LTPIFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKITFANNETIILNISFHSLWHQYTNAIIFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=305431 DWB95_RS08505 WP_017637366.1 1777554..1778123(-) (comK/comK1) [Staphylococcus pasteuri strain 3C]
ATGACAACTCAGAGTATTTACGTTATTAGAAAGGGAGATATGGTTATCAGACCTAACTATGATGAAAATAATCAGCAAAA
TGGTTCTGAAATATTAAGGTATGATAAGTCAATTATTCAGAGTCCATTTAAGGTTCAAAAGATTATTGAAAGATCATGCA
AATTTTACGGTAATAATTATTTAAGTAAAAAAGCAGAAACTAATCGTATTACAGGTATTTCTAGTAAACCCCCGATTTTA
TTAACACCCATTTTTCCTACTTATTTTTTCCCAACACATTCTGACAGGCAAGAAGAAAATTTATGGATTAACATGCATTA
TGTTGAATCAATTAAAGAATTAAAACATCGTAAATGTAAAATCACATTTGCTAATAATGAAACGATTATTTTGAACATAT
CATTTCACAGTTTATGGCATCAATACACCAATGCAATTATCTTTTATTACATGGTTGATAAACAATCCCGCATGAAATCA
AATGACCCCGATAAACCTATTGATTATGAAAAATCCTCTTTAAATATTTTTGAAGCACTTTCACGTTATTCCCTATTTGT
AGACAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(6-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653ZVU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

77.778

100

0.778
  comK/comK1 Staphylococcus aureus N315

77.778

100

0.778

Multiple sequence alignment