Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DWB95_RS07470 Genome accession   NZ_CP031280
Coordinates   1563609..1564478 (-) Length   289 a.a.
NCBI ID   WP_070451344.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain 3C     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1558609..1569478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB95_RS07455 (DWB95_07480) xerC 1558880..1559770 (-) 891 WP_126567299.1 tyrosine recombinase XerC -
  DWB95_RS07460 (DWB95_07485) trmFO 1559936..1561243 (-) 1308 WP_029055445.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DWB95_RS07465 (DWB95_07490) topA 1561356..1563431 (-) 2076 WP_186802350.1 type I DNA topoisomerase -
  DWB95_RS07470 (DWB95_07495) dprA 1563609..1564478 (-) 870 WP_070451344.1 DNA-processing protein DprA Machinery gene
  DWB95_RS07475 (DWB95_07500) - 1564689..1565927 (-) 1239 WP_070451346.1 aminoacyltransferase -
  DWB95_RS07480 (DWB95_07505) - 1565958..1567138 (-) 1181 Protein_1450 LysM peptidoglycan-binding domain-containing protein -
  DWB95_RS07485 (DWB95_07510) sucD 1567265..1568170 (-) 906 WP_017638387.1 succinate--CoA ligase subunit alpha -
  DWB95_RS07490 (DWB95_07515) sucC 1568192..1569358 (-) 1167 WP_017638388.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33615.51 Da        Isoelectric Point: 8.9572

>NTDB_id=305430 DWB95_RS07470 WP_070451344.1 1563609..1564478(-) (dprA) [Staphylococcus pasteuri strain 3C]
MNKHFLLKLYWAQFTTSQIHQLNQYYPQLFHVNDYEQESLLHCWITQYQPRLLPKFLDYKQFQYNEIMKVLRQLDINYIT
YFDKDYPYLLKEIYDYPFVLFYKGNKDILKNDKTLAIVGARKCTNYTSQALNYLFPSFKRAQLTIVSGLAAGADSEAHQQ
TLNAYLPTIAVLGYGHTHHYPKSTFSLRKKIEEQGIVISEYPPFSPIAKYKFPARNRLISGLSKGVLLTEANERSGSRIT
IDCALEQNRNVYVLPGKIFDTSTKGNLLLHQEGATIVVNEHDILQDYSI

Nucleotide


Download         Length: 870 bp        

>NTDB_id=305430 DWB95_RS07470 WP_070451344.1 1563609..1564478(-) (dprA) [Staphylococcus pasteuri strain 3C]
TTGAACAAACATTTTTTACTTAAATTATACTGGGCTCAGTTTACTACTTCACAAATACATCAACTCAACCAATATTATCC
ACAGCTCTTTCATGTTAATGATTATGAACAAGAATCGTTATTACATTGTTGGATTACTCAATACCAGCCACGATTATTGC
CTAAGTTCCTTGACTACAAACAATTTCAATATAATGAAATTATGAAAGTTCTTCGACAATTAGATATCAACTATATCACC
TATTTTGATAAAGATTATCCCTATTTATTAAAAGAAATTTATGATTATCCTTTTGTCTTATTTTATAAGGGTAATAAAGA
CATTTTAAAAAACGATAAAACTTTAGCTATAGTTGGTGCTAGAAAGTGTACAAACTATACAAGCCAAGCACTTAATTATC
TTTTTCCTTCATTTAAAAGAGCTCAACTTACAATTGTATCTGGTCTTGCTGCAGGAGCAGATAGTGAGGCACATCAACAG
ACATTGAATGCCTATTTGCCTACAATTGCTGTATTAGGTTATGGACATACACATCATTATCCAAAATCTACTTTTTCACT
TAGAAAGAAAATTGAAGAACAAGGTATTGTTATTAGCGAATATCCACCATTTTCTCCAATAGCGAAATATAAATTTCCTG
CAAGGAACAGATTGATTAGTGGTTTATCAAAAGGTGTTTTATTAACAGAAGCTAATGAAAGAAGTGGAAGTCGTATTACT
ATAGATTGTGCACTTGAACAAAATCGAAATGTCTATGTATTACCAGGAAAAATATTTGATACCTCAACAAAAGGGAATTT
ATTATTGCATCAAGAAGGCGCAACGATTGTTGTGAATGAACATGATATCTTACAAGACTATTCAATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.931

100

0.581
  dprA Staphylococcus aureus N315

57.931

100

0.581

Multiple sequence alignment