Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EXIG_RS15435 | Genome accession | NC_010556 |
| Coordinates | 3022045..3022572 (-) | Length | 175 a.a. |
| NCBI ID | WP_012371897.1 | Uniprot ID | A0A1S2W9M6 |
| Organism | Exiguobacterium sibiricum 255-15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3017045..3027572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXIG_RS15415 (Exig_3033) | dnaB | 3017832..3019184 (-) | 1353 | WP_012371893.1 | replicative DNA helicase | - |
| EXIG_RS15420 (Exig_3034) | rplI | 3019204..3019647 (-) | 444 | WP_012371894.1 | 50S ribosomal protein L9 | - |
| EXIG_RS15425 (Exig_3035) | - | 3019644..3021629 (-) | 1986 | WP_012371895.1 | DHH family phosphoesterase | - |
| EXIG_RS15430 (Exig_3036) | rpsR | 3021767..3021997 (-) | 231 | WP_012371896.1 | 30S ribosomal protein S18 | - |
| EXIG_RS15435 (Exig_3037) | ssb | 3022045..3022572 (-) | 528 | WP_012371897.1 | single-stranded DNA-binding protein | Machinery gene |
| EXIG_RS15440 (Exig_3038) | rpsF | 3022596..3022883 (-) | 288 | WP_012371898.1 | 30S ribosomal protein S6 | - |
| EXIG_RS15445 (Exig_3039) | ychF | 3023007..3024107 (-) | 1101 | WP_012371899.1 | redox-regulated ATPase YchF | - |
| EXIG_RS15450 (Exig_3040) | - | 3024358..3024546 (-) | 189 | WP_012371900.1 | DUF951 domain-containing protein | - |
| EXIG_RS15455 (Exig_3041) | - | 3024518..3025447 (-) | 930 | WP_012371901.1 | mechanosensitive ion channel family protein | - |
| EXIG_RS15460 (Exig_3042) | yyaC | 3025623..3026249 (+) | 627 | WP_012371902.1 | spore protease YyaC | - |
| EXIG_RS15465 (Exig_3043) | - | 3026334..3027098 (-) | 765 | WP_012371903.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18907.48 Da Isoelectric Point: 4.9713
>NTDB_id=30542 EXIG_RS15435 WP_012371897.1 3022045..3022572(-) (ssb) [Exiguobacterium sibiricum 255-15]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKDGQRRYRAEVVADSVRFLESRNASRSSDSDSYSSNSNTGGNGNAAGWGSQQQQNNSSSPAPASSSSNSGFGADPF
SGGSSIDLSDDDLPF
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKDGQRRYRAEVVADSVRFLESRNASRSSDSDSYSSNSNTGGNGNAAGWGSQQQQNNSSSPAPASSSSNSGFGADPF
SGGSSIDLSDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=30542 EXIG_RS15435 WP_012371897.1 3022045..3022572(-) (ssb) [Exiguobacterium sibiricum 255-15]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCTTGTGACCGTCCGTTTACAGGACAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTAT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAAAAAGGGAGCCTTGCAGGAGTTGAGGGTCGCCTTCAGATTAGT
AGCTATGACGATAAAGATGGTCAACGTCGTTATCGTGCAGAAGTCGTCGCGGATAGTGTTCGATTCCTTGAATCACGCAA
TGCAAGCCGTTCTTCCGATAGTGATAGCTACTCTTCGAATTCAAATACAGGTGGAAACGGAAATGCTGCAGGATGGGGTT
CACAGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTC
AGCGGCGGCAGTTCGATCGATCTTTCAGACGACGATCTTCCATTCTAA
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCTTGTGACCGTCCGTTTACAGGACAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTAT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAAAAAGGGAGCCTTGCAGGAGTTGAGGGTCGCCTTCAGATTAGT
AGCTATGACGATAAAGATGGTCAACGTCGTTATCGTGCAGAAGTCGTCGCGGATAGTGTTCGATTCCTTGAATCACGCAA
TGCAAGCCGTTCTTCCGATAGTGATAGCTACTCTTCGAATTCAAATACAGGTGGAAACGGAAATGCTGCAGGATGGGGTT
CACAGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTC
AGCGGCGGCAGTTCGATCGATCTTTCAGACGACGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.809 |
100 |
0.537 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.648 |
100 |
0.537 |