Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DWB95_RS04450 Genome accession   NZ_CP031280
Coordinates   931062..931691 (+) Length   209 a.a.
NCBI ID   WP_017637853.1    Uniprot ID   A0AAW7YTG2
Organism   Staphylococcus pasteuri strain 3C     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 926062..936691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB95_RS04425 (DWB95_04440) - 926872..927858 (-) 987 WP_029056008.1 aromatic acid exporter family protein -
  DWB95_RS04430 (DWB95_04445) map 928024..928779 (+) 756 WP_017637857.1 type I methionyl aminopeptidase -
  DWB95_RS04435 (DWB95_04450) - 928930..929316 (+) 387 WP_017637856.1 DUF2543 family protein -
  DWB95_RS04440 (DWB95_04455) liaF 929331..930032 (+) 702 WP_017637855.1 cell wall-active antibiotics response protein LiaF -
  DWB95_RS04445 (DWB95_04460) vraS 930029..931072 (+) 1044 WP_017637854.1 sensor histidine kinase Regulator
  DWB95_RS04450 (DWB95_04465) vraR 931062..931691 (+) 630 WP_017637853.1 two-component system response regulator VraR Regulator
  DWB95_RS04455 (DWB95_04470) - 931782..933020 (-) 1239 WP_154874266.1 YihY/virulence factor BrkB family protein -
  DWB95_RS04460 (DWB95_04475) - 933310..933594 (-) 285 WP_017637851.1 hypothetical protein -
  DWB95_RS04465 (DWB95_04480) - 933599..934063 (-) 465 WP_017637850.1 low molecular weight protein-tyrosine-phosphatase -
  DWB95_RS04470 (DWB95_04485) - 934225..934407 (+) 183 WP_037555624.1 DUF1128 domain-containing protein -
  DWB95_RS04475 (DWB95_04490) - 934421..935662 (+) 1242 WP_046467434.1 aminopeptidase -
  DWB95_RS04480 (DWB95_04495) - 935717..936247 (+) 531 WP_017637847.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23553.14 Da        Isoelectric Point: 4.7051

>NTDB_id=305415 DWB95_RS04450 WP_017637853.1 931062..931691(+) (vraR) [Staphylococcus pasteuri strain 3C]
MAIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGESGKDAIAKAHELQPDLILMDLLMDDMDGVEATTEIKKDLPQIKVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTYNGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305415 DWB95_RS04450 WP_017637853.1 931062..931691(+) (vraR) [Staphylococcus pasteuri strain 3C]
ATGGCGATTAAAGTATTATTTGTAGATGACCATGAAATGGTTAGGATAGGGATATCAAGTTATTTATCAACACAATCCGA
CATTGAAGTAGTAGGTGAAGGAGAATCTGGTAAAGATGCAATAGCTAAAGCGCATGAATTGCAACCCGATTTAATATTGA
TGGATTTACTAATGGATGATATGGATGGTGTAGAAGCTACAACAGAAATAAAAAAAGATTTACCACAAATTAAAGTAGTT
ATGTTAACAAGTTTTATTGAAGATAAAGAAGTTTATCGTGCTTTAGATGCAGGTGTAGATAGTTATATTTTAAAAACAAC
TAGTGCAAGTGATATAGCTGAAGCGGTTCGTAAAACTTATAATGGTGAATCTGTTTTTGAACCAGAAGTATTAGTGAAAA
TGCGAAATAGAATGAAAAAACGTGCAGAATTATATGAAATGTTAACAGAAAGAGAAATGGAAATCTTATTATTAATTGCA
AAAGGTTATTCCAATCAGGAAATTGCCAGTGCTTCACATATTACAATTAAAACTGTTAAAACACATGTTAGTAATATATT
AAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTAATTTATGCATTTCAACATAATCTTATCCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368

Multiple sequence alignment