Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DWB97_RS07405 Genome accession   NZ_CP031274
Coordinates   1496919..1497779 (-) Length   286 a.a.
NCBI ID   WP_105965344.1    Uniprot ID   A0AAE5T1T0
Organism   Staphylococcus chromogenes strain 17A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1471268..1534538 1496919..1497779 within 0


Gene organization within MGE regions


Location: 1471268..1534538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB97_RS07305 (DWB97_07335) - 1473398..1473703 (-) 306 WP_037573366.1 YlxQ family RNA-binding protein -
  DWB97_RS07310 (DWB97_07340) - 1473700..1473987 (-) 288 WP_037573364.1 RNase P modulator RnpM -
  DWB97_RS07315 (DWB97_07345) nusA 1474000..1475175 (-) 1176 WP_103159290.1 transcription termination factor NusA -
  DWB97_RS07320 (DWB97_07350) rimP 1475195..1475662 (-) 468 WP_145400998.1 ribosome maturation factor RimP -
  DWB97_RS07325 (DWB97_07355) - 1475789..1480099 (-) 4311 WP_145400999.1 PolC-type DNA polymerase III -
  DWB97_RS07330 (DWB97_07360) - 1480296..1482002 (-) 1707 WP_103159287.1 proline--tRNA ligase -
  DWB97_RS07335 (DWB97_07365) rseP 1482030..1483310 (-) 1281 WP_145401000.1 RIP metalloprotease RseP -
  DWB97_RS07340 (DWB97_07370) - 1483317..1484447 (-) 1131 WP_145401842.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  DWB97_RS07345 (DWB97_07375) - 1484463..1485242 (-) 780 WP_037573352.1 phosphatidate cytidylyltransferase -
  DWB97_RS07350 (DWB97_07380) - 1485256..1486017 (-) 762 WP_145401001.1 isoprenyl transferase -
  DWB97_RS07355 (DWB97_07385) frr 1486167..1486721 (-) 555 WP_105986163.1 ribosome recycling factor -
  DWB97_RS07360 (DWB97_07390) pyrH 1486741..1487463 (-) 723 WP_037573342.1 UMP kinase -
  DWB97_RS07365 (DWB97_07395) tsf 1487617..1488498 (-) 882 WP_182472242.1 translation elongation factor Ts -
  DWB97_RS07370 (DWB97_07400) rpsB 1488713..1489501 (-) 789 WP_037573336.1 30S ribosomal protein S2 -
  DWB97_RS07375 (DWB97_07405) codY 1489663..1490436 (-) 774 WP_037573333.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  DWB97_RS07380 (DWB97_07410) hslU 1490451..1491860 (-) 1410 WP_145401002.1 ATP-dependent protease ATPase subunit HslU -
  DWB97_RS07385 (DWB97_07415) hslV 1491877..1492419 (-) 543 WP_037573327.1 ATP-dependent protease subunit HslV -
  DWB97_RS07390 (DWB97_07420) xerC 1492425..1493315 (-) 891 WP_165885752.1 tyrosine recombinase XerC -
  DWB97_RS07395 (DWB97_07425) trmFO 1493437..1494741 (-) 1305 WP_145401004.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DWB97_RS07400 (DWB97_07430) topA 1494754..1496823 (-) 2070 WP_037573320.1 type I DNA topoisomerase -
  DWB97_RS07405 (DWB97_07435) dprA 1496919..1497779 (-) 861 WP_105965344.1 DNA-processing protein DprA Machinery gene
  DWB97_RS07410 (DWB97_07440) sucD 1498084..1498992 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  DWB97_RS07415 (DWB97_07445) sucC 1499013..1500179 (-) 1167 WP_145401005.1 ADP-forming succinate--CoA ligase subunit beta -
  DWB97_RS07420 (DWB97_07450) - 1500404..1500673 (-) 270 WP_105986155.1 hypothetical protein -
  DWB97_RS07425 (DWB97_07455) - 1500752..1501531 (-) 780 WP_145401006.1 ribonuclease HII -
  DWB97_RS07430 (DWB97_07460) ylqF 1501512..1502402 (-) 891 WP_145401007.1 ribosome biogenesis GTPase YlqF -
  DWB97_RS07435 (DWB97_07465) - 1502634..1502996 (+) 363 WP_145401844.1 GtrA family protein -
  DWB97_RS07440 (DWB97_07470) - 1503015..1505621 (+) 2607 WP_145401008.1 YfhO family protein -
  DWB97_RS07445 (DWB97_07475) - 1505618..1508203 (+) 2586 WP_323744067.1 YfhO family protein -
  DWB97_RS07450 (DWB97_07480) - 1508258..1508809 (-) 552 WP_165885754.1 phosphatase PAP2 family protein -
  DWB97_RS07455 (DWB97_07485) rplS 1509206..1509556 (-) 351 WP_037573298.1 50S ribosomal protein L19 -
  DWB97_RS07460 (DWB97_07490) trmD 1509658..1510395 (-) 738 WP_145401010.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DWB97_RS07465 (DWB97_07495) rimM 1510392..1510895 (-) 504 WP_145401011.1 ribosome maturation factor RimM -
  DWB97_RS07470 (DWB97_07500) rpsP 1510999..1511274 (-) 276 WP_105986149.1 30S ribosomal protein S16 -
  DWB97_RS07475 (DWB97_07505) ffh 1511520..1512887 (-) 1368 WP_145401012.1 signal recognition particle protein -
  DWB97_RS07480 (DWB97_07510) - 1512901..1513233 (-) 333 WP_037573283.1 putative DNA-binding protein -
  DWB97_RS07485 (DWB97_07515) ftsY 1513220..1514575 (-) 1356 WP_107381219.1 signal recognition particle-docking protein FtsY -
  DWB97_RS07490 (DWB97_07520) smc 1514576..1518142 (-) 3567 WP_145401013.1 chromosome segregation protein SMC -
  DWB97_RS07495 (DWB97_07525) rnc 1518146..1518877 (-) 732 WP_145401014.1 ribonuclease III -
  DWB97_RS07500 (DWB97_07530) - 1518986..1519219 (-) 234 WP_019165520.1 acyl carrier protein -
  DWB97_RS07505 (DWB97_07535) fabG 1519394..1520131 (-) 738 WP_145401015.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  DWB97_RS07510 (DWB97_07540) fabD 1520124..1521050 (-) 927 WP_145401016.1 ACP S-malonyltransferase -
  DWB97_RS07515 (DWB97_07545) plsX 1521043..1522029 (-) 987 WP_145401017.1 phosphate acyltransferase PlsX -
  DWB97_RS07520 (DWB97_07550) fapR 1522022..1522591 (-) 570 WP_037573258.1 transcription factor FapR -
  DWB97_RS07525 (DWB97_07555) - 1522679..1523128 (-) 450 WP_105986141.1 ASCH domain-containing protein -
  DWB97_RS07530 (DWB97_07560) recG 1523279..1525324 (-) 2046 WP_145401018.1 ATP-dependent DNA helicase RecG -
  DWB97_RS07535 (DWB97_07565) sdaAA 1525326..1526195 (-) 870 WP_145401019.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  DWB97_RS07540 (DWB97_07570) sdaAB 1526214..1526879 (-) 666 WP_037573246.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  DWB97_RS07545 (DWB97_07575) fakA 1527038..1528696 (-) 1659 WP_145401020.1 fatty acid kinase catalytic subunit FakA -
  DWB97_RS07550 (DWB97_07580) - 1528709..1529083 (-) 375 WP_105986137.1 Asp23/Gls24 family envelope stress response protein -
  DWB97_RS07555 (DWB97_07585) rpmB 1529492..1529680 (+) 189 WP_037564748.1 50S ribosomal protein L28 -
  DWB97_RS07560 (DWB97_07590) - 1530268..1530903 (-) 636 WP_145401021.1 thiamine diphosphokinase -
  DWB97_RS07565 (DWB97_07595) rpe 1530907..1531557 (-) 651 WP_145401022.1 ribulose-phosphate 3-epimerase -
  DWB97_RS07570 (DWB97_07600) rsgA 1531557..1532432 (-) 876 WP_105986134.1 ribosome small subunit-dependent GTPase A -
  DWB97_RS07575 (DWB97_07605) - 1532694..1533971 (-) 1278 WP_037573237.1 cytochrome P450 -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32284.37 Da        Isoelectric Point: 8.8761

>NTDB_id=305332 DWB97_RS07405 WP_105965344.1 1496919..1497779(-) (dprA) [Staphylococcus chromogenes strain 17A]
MHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLPIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHYALCNNIPT
IAVLGFGHFHHYPKHTQTLRTHIDKYAGGLIISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=305332 DWB97_RS07405 WP_105965344.1 1496919..1497779(-) (dprA) [Staphylococcus chromogenes strain 17A]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATTCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGCGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATGCATTAGCCCATCATTATGCATTGTGTAACAACATCCCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGAACACATATTGATAAATATGC
AGGGGGGTTAATTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAATACAAAAGGAAATTTATTGCGTGTAAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.65

98.951

0.521
  dprA Staphylococcus aureus N315

52.297

98.951

0.517
  dprA Bacillus subtilis subsp. subtilis str. 168

38.007

94.755

0.36

Multiple sequence alignment