Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DWB96_RS04175 | Genome accession | NZ_CP031271 |
| Coordinates | 894354..894749 (+) | Length | 131 a.a. |
| NCBI ID | WP_002445557.1 | Uniprot ID | A0A1J3ZZ23 |
| Organism | Staphylococcus caprae strain 26D | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 889354..899749
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWB96_RS04145 (DWB96_04160) | atpD | 889588..891000 (+) | 1413 | WP_002445568.1 | F0F1 ATP synthase subunit beta | - |
| DWB96_RS04150 (DWB96_04165) | - | 891020..891424 (+) | 405 | WP_002445567.1 | F0F1 ATP synthase subunit epsilon | - |
| DWB96_RS04155 (DWB96_04170) | - | 891574..891807 (+) | 234 | WP_037541859.1 | DUF1146 family protein | - |
| DWB96_RS04160 (DWB96_04175) | murA | 891917..893182 (+) | 1266 | WP_044466358.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| DWB96_RS04165 (DWB96_04180) | fabZ | 893224..893661 (+) | 438 | WP_002445561.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| DWB96_RS04170 (DWB96_04185) | - | 893718..894161 (-) | 444 | WP_037541858.1 | YwpF-like family protein | - |
| DWB96_RS04175 (DWB96_04190) | ssb | 894354..894749 (+) | 396 | WP_002445557.1 | single-stranded DNA-binding protein | Machinery gene |
| DWB96_RS04180 (DWB96_04195) | - | 895141..895863 (+) | 723 | WP_002445556.1 | transglycosylase family protein | - |
| DWB96_RS04185 (DWB96_04200) | tenA | 896162..896851 (+) | 690 | WP_002445555.1 | thiaminase II | - |
| DWB96_RS04190 (DWB96_04205) | thiD | 896844..897665 (+) | 822 | WP_145375681.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DWB96_RS04195 (DWB96_04210) | thiM | 897658..898452 (+) | 795 | WP_002445553.1 | hydroxyethylthiazole kinase | - |
| DWB96_RS04200 (DWB96_04215) | thiE | 898453..899091 (+) | 639 | WP_002445552.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15128.93 Da Isoelectric Point: 5.0119
>NTDB_id=305282 DWB96_RS04175 WP_002445557.1 894354..894749(+) (ssb) [Staphylococcus caprae strain 26D]
MLNKIVIVGRLTKDAQIYEKEDSRVATFCVATERNYKDENNEVSSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKSNEIISQNQFDEDTYHSDEFETINI
MLNKIVIVGRLTKDAQIYEKEDSRVATFCVATERNYKDENNEVSSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKSNEIISQNQFDEDTYHSDEFETINI
Nucleotide
Download Length: 396 bp
>NTDB_id=305282 DWB96_RS04175 WP_002445557.1 894354..894749(+) (ssb) [Staphylococcus caprae strain 26D]
ATGTTAAATAAAATAGTAATTGTTGGTAGGTTAACTAAAGATGCCCAAATATATGAAAAGGAGGATAGTAGAGTTGCAAC
GTTTTGTGTAGCAACAGAAAGAAATTACAAAGACGAAAATAATGAAGTTTCGAGCGACTATTTACTGTGTAAGGCATTTG
GTAAAACAGCTACGAATATTGAAAAATATACCAGTCAAGGTACTTTAGTAGGGATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGGCAAACACATTTTGTAACCGAACTATATGTAGAAACGATTAAATTCATGTCTCCCAAAACAAAAAG
TAACGAAATTATCTCTCAAAATCAATTTGACGAAGACACTTATCACTCAGACGAATTTGAAACTATCAATATATAA
ATGTTAAATAAAATAGTAATTGTTGGTAGGTTAACTAAAGATGCCCAAATATATGAAAAGGAGGATAGTAGAGTTGCAAC
GTTTTGTGTAGCAACAGAAAGAAATTACAAAGACGAAAATAATGAAGTTTCGAGCGACTATTTACTGTGTAAGGCATTTG
GTAAAACAGCTACGAATATTGAAAAATATACCAGTCAAGGTACTTTAGTAGGGATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGGCAAACACATTTTGTAACCGAACTATATGTAGAAACGATTAAATTCATGTCTCCCAAAACAAAAAG
TAACGAAATTATCTCTCAAAATCAATTTGACGAAGACACTTATCACTCAGACGAATTTGAAACTATCAATATATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |