Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV445_RS10995 Genome accession   NZ_CP031255
Coordinates   2176554..2177360 (-) Length   268 a.a.
NCBI ID   WP_107970446.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2171554..2182360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS10975 - 2172049..2172795 (-) 747 WP_240318148.1 ester cyclase -
  DV445_RS10980 - 2172925..2174667 (+) 1743 WP_114922384.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  DV445_RS10985 thiD 2174976..2175797 (-) 822 WP_205277231.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DV445_RS10990 pdxH 2175833..2176465 (-) 633 WP_114922385.1 pyridoxamine 5'-phosphate oxidase -
  DV445_RS10995 comL 2176554..2177360 (-) 807 WP_107970446.1 outer membrane protein assembly factor BamD Machinery gene
  DV445_RS11000 rluD 2177359..2178477 (+) 1119 WP_114922386.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV445_RS11005 ubiB 2178690..2180201 (-) 1512 WP_114922387.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  DV445_RS11010 - 2180393..2180851 (+) 459 WP_107918730.1 DUF5339 family protein -
  DV445_RS11015 - 2180950..2181408 (+) 459 WP_114922388.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31182.10 Da        Isoelectric Point: 8.5556

>NTDB_id=305139 DV445_RS10995 WP_107970446.1 2176554..2177360(-) (comL) [Neisseria elongata strain M15910]
MKKILLVVALGIALGGCAANKGTSDKDAQITQDWPVEKLYAEAQDELNSSNYTRAVKLYELLESRFPQGRYAQQAQLDTA
YAYYKDEEREKALAAVERFRRLHPQHPNMDYALYLKGLILFNEDKSFLNKLASQDWSDRDPKANREAYQAFAELVQRYPQ
SKYVEEASKQMEKLVDALAGNEISVARYYAKRGAHLAAANRAQNIITGFQNTRFTEEALAIMEVSYRKMNRQQLADDTRR
ILQQNFPQSPYLQQEWRSDDAPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=305139 DV445_RS10995 WP_107970446.1 2176554..2177360(-) (comL) [Neisseria elongata strain M15910]
ATGAAAAAAATTCTTTTAGTAGTAGCTTTGGGTATCGCGCTGGGCGGTTGTGCCGCCAACAAGGGAACTTCCGACAAAGA
TGCGCAGATTACCCAGGATTGGCCGGTCGAGAAGTTGTATGCCGAGGCGCAAGATGAGTTAAACAGCAGCAATTATACGC
GGGCTGTCAAGTTATATGAACTTTTGGAATCGCGTTTCCCTCAGGGGCGTTATGCGCAGCAGGCTCAGTTGGACACAGCC
TATGCCTACTACAAGGACGAGGAACGCGAAAAAGCATTGGCGGCAGTCGAGCGTTTCCGACGCCTGCATCCGCAGCATCC
GAATATGGATTATGCCCTTTATCTGAAGGGTTTGATTTTGTTTAACGAGGACAAATCGTTCTTGAACAAGCTGGCTTCCC
AAGACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAGGCCTATCAGGCGTTTGCCGAGCTGGTTCAACGCTATCCTCAG
AGCAAATATGTCGAAGAAGCGTCCAAGCAGATGGAAAAACTGGTGGATGCGCTGGCGGGTAACGAAATCTCCGTCGCCCG
TTATTACGCCAAACGCGGCGCGCATCTGGCCGCGGCCAACCGTGCGCAGAATATCATTACCGGTTTCCAGAATACCCGCT
TCACAGAAGAGGCCTTGGCGATTATGGAGGTGTCCTACCGCAAGATGAACCGTCAGCAGTTGGCGGACGATACCCGCCGC
ATTTTGCAGCAAAACTTCCCGCAAAGCCCTTATTTGCAGCAGGAATGGAGGAGCGACGATGCGCCGTGGTGGCGTTATTG
GAAATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

76.779

99.627

0.765
  comL Neisseria gonorrhoeae MS11

75.655

99.627

0.754

Multiple sequence alignment