Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DV445_RS06680 Genome accession   NZ_CP031255
Coordinates   1320443..1324012 (-) Length   1189 a.a.
NCBI ID   WP_114921987.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315443..1329012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS13410 - 1315934..1316749 (-) 816 WP_240318124.1 TonB-dependent receptor plug domain-containing protein -
  DV445_RS06660 - 1317059..1317853 (-) 795 WP_107853343.1 ABC transporter ATP-binding protein -
  DV445_RS06665 - 1317850..1318755 (-) 906 WP_114921986.1 ABC transporter permease -
  DV445_RS06670 - 1318966..1319991 (-) 1026 WP_041961371.1 ABC transporter substrate-binding protein -
  DV445_RS06675 - 1320092..1320364 (-) 273 WP_074894423.1 accessory factor UbiK family protein -
  DV445_RS06680 recB 1320443..1324012 (-) 3570 WP_114921987.1 exodeoxyribonuclease V subunit beta Machinery gene
  DV445_RS06685 greB 1324150..1324638 (+) 489 WP_070452323.1 transcription elongation factor GreB -
  DV445_RS06690 - 1324711..1325166 (-) 456 WP_114921988.1 WG repeat-containing protein -
  DV445_RS06695 - 1325258..1326118 (-) 861 WP_114921989.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  DV445_RS06700 - 1326320..1327639 (-) 1320 WP_114921990.1 DUF445 domain-containing protein -
  DV445_RS06705 pgeF 1327941..1328729 (-) 789 WP_114921991.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 1189 a.a.        Molecular weight: 133043.53 Da        Isoelectric Point: 6.1454

>NTDB_id=305132 DV445_RS06680 WP_114921987.1 1320443..1324012(-) (recB) [Neisseria elongata strain M15910]
MSRSILPFDPLTVPVQGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAATAELKTRLRGRLDEAFRRIR
GDKMDEEADGFMRGLLEQAARQETPERLELRLKAALSQFDNAAIYTIHGFCQRLLGDYAFLCQVPFETSSADDNDKRELN
TYAQDFWRHNVSHDAQNARLAFHADLTPDQVLQQFSRYLGRPDLLFRRPQTDLAAETERAQAVWTELQQRFPDLKDLFWR
VHPMLNGNKFRKTTYETKLAELEKLLQQTAMPAKWLETNLGNTNGESVFSADYLTAAVKKGQTAPEADLAALSFLHKVRT
ASSALLDAEQQALIALQLDCLQYVRRTAAEQRATRQERSPDDLLLDVYHALTAGAHQDKLAEAVSQNWRVALIDEFQDTD
PLQYEIFRRTFAAHGNPLFLVGDPKQAIYGFRGADIYAYLQAAADTPVHYTLAHNYRSHSLLIDNIGRLFQQKERPFVLE
HIGYPAVTAPRGTSRLTPPQAALKIRWLNDGGEPDPNKETLRSRAAEYCADEIAALINQAAEGRLNYKNTPVEAGQIAVL
VHSHNQGAMIKRTLAARGIPSVSIERESVFAGEEAKALAALLGFWLEPRRTEPLRFILAGILFGQTAEQLHALNRDEALL
SGYISAAEDFLQIWQRQGIYAALTAFARRYGLEGRLLAADGGRTLTNFWQLAELLADENENSHTPAALHQWLLAKIQDPP
QNENAVLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTAEKKNEAWHILHRENGSELLADSQLDEADREQLDDEDLGE
RLRLLYVALTRAEEQLVIYAARCSSTPRNTFAYLLEGLPSDGRLKTRQAYEAEKENQAEMLRRNWLRWINAAPEGIEWQE
GAPLSAAVQTRRRNGTEYRAAVYPPRRFSFIRHTSFTGLTRHLGHGPTRPDDDDGLQPALDPAELSAGSLLPLPDTDNAP
RDIFHFPRGAAAGICLHEILEKHDFACPAGQQRENIAAILEKHGIETEWLDAVCLMADQTAAAPLHSGTTLSALPAARRK
AEMGFVMHFDHLELGRLKNHLAAACLPEACTAAADRLDFPTLQGFLNGFIDLTCLLPDGTACIIDYKSNHLGMDTGSYTQ
SALDQAVADHHYYLQAWIYALAAARHLKQRGQMPRTVRIRYLFLRGLDSGGSNGIWSWDIPAASLAEWL

Nucleotide


Download         Length: 3570 bp        

>NTDB_id=305132 DV445_RS06680 WP_114921987.1 1320443..1324012(-) (recB) [Neisseria elongata strain M15910]
ATGTCCCGCAGCATCCTCCCGTTCGACCCGCTGACCGTCCCCGTACAAGGCACCGCCTTAATCGAAGCCTCCGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTCTTCGCCCGCCTGATCCTGCTGGAAAAGCTGCCTGTGGACAAAGTGCTGGTGG
TTACCTTCACCAAAGCCGCCACCGCCGAACTGAAAACCCGCCTGCGCGGCCGTTTGGACGAAGCCTTCCGCCGGATACGC
GGCGACAAAATGGACGAAGAAGCCGACGGTTTCATGCGCGGCCTGCTCGAACAGGCTGCGCGGCAGGAAACGCCCGAACG
GCTGGAACTGCGCCTGAAGGCCGCGCTGTCGCAGTTTGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAACGCC
TGCTGGGCGACTACGCCTTCCTCTGCCAAGTGCCGTTTGAAACCTCCTCCGCCGACGACAACGACAAGCGCGAGCTGAAC
ACCTACGCGCAGGATTTCTGGCGGCACAACGTGTCGCACGACGCGCAAAACGCCCGCCTCGCCTTTCATGCCGACCTCAC
GCCCGACCAGGTATTGCAACAGTTTTCCCGCTACCTGGGCCGTCCCGACCTGCTTTTCAGACGGCCTCAAACCGATTTGG
CCGCCGAAACGGAGCGGGCGCAGGCGGTTTGGACGGAACTGCAACAGCGTTTCCCCGACCTGAAAGACCTGTTCTGGCGG
GTGCATCCCATGTTGAACGGCAACAAATTCCGCAAAACCACCTACGAAACCAAACTGGCCGAACTGGAAAAACTGCTGCA
ACAAACGGCGATGCCCGCAAAATGGTTGGAAACAAACCTGGGCAACACCAACGGGGAAAGCGTTTTTTCCGCCGACTACC
TGACCGCCGCCGTCAAAAAAGGCCAAACCGCCCCCGAAGCCGACCTGGCCGCACTGTCCTTCCTCCACAAAGTCCGAACC
GCATCATCAGCCCTGCTCGATGCCGAACAACAGGCACTTATCGCCCTGCAGCTCGACTGCCTGCAATACGTCCGCCGCAC
CGCCGCCGAACAGCGGGCGACGCGGCAGGAACGCAGCCCCGACGACCTGCTGCTCGACGTTTACCACGCCCTCACCGCCG
GCGCGCACCAAGACAAACTCGCCGAAGCCGTCTCGCAAAACTGGCGCGTCGCCCTGATAGACGAATTCCAAGACACCGAC
CCGCTGCAATACGAAATCTTCCGCCGCACCTTTGCCGCCCACGGCAACCCGCTCTTCCTCGTCGGCGACCCCAAACAGGC
GATTTACGGCTTTCGCGGCGCGGACATCTACGCCTACCTCCAAGCCGCCGCCGATACCCCCGTCCACTACACCCTCGCGC
ACAACTACCGCAGCCACAGCCTGCTCATCGACAACATCGGCCGCCTGTTCCAACAGAAAGAACGCCCCTTCGTCCTCGAA
CACATCGGCTACCCGGCCGTTACCGCCCCGCGCGGGACAAGCCGCCTCACCCCGCCGCAGGCGGCATTGAAAATCCGCTG
GCTGAACGACGGCGGCGAACCCGACCCCAACAAAGAAACCCTCCGCAGCCGCGCAGCCGAATACTGCGCCGACGAAATCG
CCGCCCTGATCAACCAAGCGGCGGAAGGCCGTCTGAATTACAAAAACACCCCCGTGGAAGCCGGCCAAATCGCCGTTTTG
GTCCACAGCCACAACCAAGGCGCGATGATAAAGCGCACACTGGCCGCACGCGGTATCCCCAGCGTATCGATAGAGCGCGA
ATCCGTATTTGCCGGCGAAGAAGCCAAAGCCCTGGCCGCACTGCTCGGCTTCTGGCTCGAACCGCGCCGCACCGAACCCC
TGCGCTTCATCCTCGCCGGCATCCTGTTCGGCCAAACCGCCGAACAACTCCATGCCCTCAACCGCGACGAAGCCCTGCTG
TCCGGATACATCTCCGCCGCCGAAGATTTCCTGCAAATTTGGCAGCGGCAGGGCATCTACGCCGCCCTGACCGCCTTTGC
CCGCCGCTACGGCCTCGAAGGCCGCCTGCTGGCCGCAGACGGCGGACGCACCCTGACCAACTTCTGGCAGCTGGCCGAAC
TTTTGGCCGACGAAAACGAAAACAGCCACACCCCCGCCGCGCTGCACCAATGGCTGCTGGCCAAAATCCAAGACCCGCCC
CAAAACGAAAACGCCGTCCTACGGCTGGAAAGCGATGAGGCACTGGTCAAAATCGTAACCATCCATGCTTCAAAAGGCCT
GCAATATCCCTTCGTGTTCTGCCCGTTCTCCTGGGATACCGCCGAAAAGAAAAACGAAGCATGGCACATCCTCCACCGCG
AAAACGGCAGCGAACTGCTTGCCGACAGCCAGCTCGACGAAGCCGACCGCGAACAGCTCGACGACGAAGACCTGGGCGAA
CGCCTGCGCCTGCTCTACGTCGCCCTCACCCGTGCTGAAGAACAACTCGTCATCTATGCCGCCCGCTGCAGCAGCACCCC
GCGCAACACCTTTGCCTACCTGCTCGAAGGCCTGCCTTCAGACGGCCGTCTGAAAACCCGCCAAGCCTACGAAGCCGAGA
AAGAAAACCAAGCCGAAATGCTGCGCCGCAACTGGCTGCGCTGGATAAACGCCGCCCCCGAAGGCATCGAATGGCAGGAA
GGCGCACCCCTTTCGGCAGCCGTGCAAACCCGCCGCCGCAACGGCACCGAATACCGCGCCGCCGTTTACCCGCCGCGCCG
TTTCAGCTTCATCCGCCACACCAGCTTTACCGGCCTCACCCGCCACCTCGGCCACGGCCCGACCCGGCCCGATGACGACG
ACGGACTGCAACCCGCGCTCGACCCGGCCGAACTGTCCGCCGGCAGCCTTCTGCCGCTTCCCGATACGGACAACGCCCCG
CGCGACATCTTCCACTTTCCCCGTGGCGCGGCCGCCGGCATCTGCCTGCACGAAATCCTCGAAAAACACGACTTCGCCTG
CCCCGCCGGACAACAGCGCGAAAACATCGCCGCCATATTGGAAAAACACGGCATCGAAACCGAATGGCTGGATGCCGTCT
GCCTCATGGCCGACCAAACCGCCGCCGCACCGCTGCACAGCGGCACCACCCTCTCAGCCCTCCCCGCCGCCCGCCGCAAA
GCGGAAATGGGCTTCGTCATGCACTTCGACCATTTGGAATTAGGCCGTCTGAAAAACCATCTGGCCGCCGCATGCCTGCC
CGAAGCCTGCACCGCCGCCGCAGACCGGTTGGACTTCCCCACCCTGCAAGGCTTCCTCAACGGCTTCATCGACCTGACCT
GCCTGCTGCCCGACGGCACGGCCTGCATCATCGACTACAAATCCAACCACCTGGGCATGGACACCGGAAGCTACACCCAA
TCCGCCCTCGACCAAGCCGTTGCCGACCACCACTATTACCTCCAAGCCTGGATTTACGCCCTTGCCGCCGCCCGCCACCT
CAAACAGCGCGGACAGATGCCCCGTACCGTCCGCATCCGCTACCTCTTCCTGCGCGGACTCGATTCCGGCGGCAGCAACG
GCATCTGGTCGTGGGACATCCCCGCCGCCTCACTGGCCGAATGGCTGTAG

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1055-1165)

UvrD-like helicase C-terminal domain (UvrD_C)

(450-820)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

51.071

100

0.521

Multiple sequence alignment