Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DV445_RS06455 Genome accession   NZ_CP031255
Coordinates   1272272..1275460 (-) Length   1062 a.a.
NCBI ID   WP_114921962.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1267272..1280460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS06445 - 1270411..1271196 (+) 786 WP_205277224.1 TatD family hydrolase -
  DV445_RS06450 - 1271442..1272212 (-) 771 WP_114921961.1 sulfite exporter TauE/SafE family protein -
  DV445_RS06455 recC 1272272..1275460 (-) 3189 WP_114921962.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DV445_RS13400 - 1275558..1275722 (-) 165 WP_234404618.1 hypothetical protein -
  DV445_RS06465 - 1275789..1276499 (-) 711 WP_107853315.1 hypothetical protein -
  DV445_RS13405 - 1276522..1276911 (-) 390 WP_234404619.1 hypothetical protein -
  DV445_RS06475 leuC 1277101..1278507 (-) 1407 WP_114921963.1 3-isopropylmalate dehydratase large subunit -
  DV445_RS06480 gshA 1278727..1280064 (+) 1338 WP_114921964.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 1062 a.a.        Molecular weight: 119110.24 Da        Isoelectric Point: 5.2332

>NTDB_id=305130 DV445_RS06455 WP_114921962.1 1272272..1275460(-) (recC) [Neisseria elongata strain M15910]
MLHLYQSNRLEDLAELLWKIQESSPLSDPLQEEEILVQSQGMRRFIEHALAKSGGIAANLRFSLPAGFNWRLMRELLPGI
PELSPFNTEVMRWRLLELFFSDGLSAPEYSAARQALSAYLSGGSVAAYQLAGQLADIFDQYLVYRTDWIDAWQNGRLIGL
GEDEIWQAELWRFLDDGRQIAPHRVALWHKLLDALSAPGAKLPERLFVFGIATLAPMYLQLLQAVAQHSEVHIFALNPAA
EYWGNIIEPAQMLQNPDDTDLSQTGHPLLASLGKQGRDFFNALTESELHTDLQVYADEPLSDGLLHRLQYDIQTLSLPDG
TAALDDSIRIVCAHSPLRELQILKEHLLQQFDRHPDLQPHDIAVLTPDIEPYVPFIEAVFGEQSGRPLPYSVSDVKLSRR
RPLLHALEQVLELFDSRFEADKVTALLDSEPVLTRFGLTREDLPLLHDTIASLNIHWGLDAEMRDGADPLFTWQQGLDRL
ALGWLLPYGGGLWQGISPWHTDPGHTAVLSRFAAFIRRLAHWRQIWMQPENIGGWTERVRKLAGELFTPTEDDGQSVRQL
EQALARWHQEAELAGFGGKLPYSVINLHLARFLGSQSETGFLRGGITFCSMVPMRSLPFKTICLLGLNDGLFPRNTRAAA
FDLIARHPKKGDRARRDDDRYLFLESLISAREHLYLSYVGRSIRTNEALAPSALLNELADCIADMTGKSTAELYAGQIEQ
HPLQAFSTRYFDGGSLSSSRQDYADALNRPSEKRPPFYTRPLEDGKPPLSVSQNELAAFWKNPVKHWLRHTLDWQPPYLE
EADSAGEPFAPPKSREIAAAYLQARREHRDFADTAAELTAQSMLPAGQLGTLWRTNFETAAKSLEQEILDSPKLPAAPYE
YLSDGLTLHGSLTALHLHGQIHFLDHRPNAPEKIGLYLQHLIYNTVRPAGSGDLSSRWVLPDEILTLPPVPAGQAAEILN
GWLAYYLIGQTRPLPFFPKTSLAAAQTLLSESKKSEDEKLQAARKAAATHYFGGKMNVGQADYAEVALVFGKDETPPIES
ELFWLLVENLLLPTLSALQEAV

Nucleotide


Download         Length: 3189 bp        

>NTDB_id=305130 DV445_RS06455 WP_114921962.1 1272272..1275460(-) (recC) [Neisseria elongata strain M15910]
ATGCTCCACCTCTACCAATCCAACCGCCTCGAAGACCTTGCCGAACTATTGTGGAAAATACAGGAAAGCAGCCCGCTGTC
CGACCCGTTGCAGGAAGAGGAAATCCTGGTGCAAAGCCAAGGCATGCGCCGCTTCATCGAACACGCACTGGCCAAAAGCG
GCGGCATCGCGGCCAACCTCCGCTTCTCGCTGCCGGCCGGCTTCAACTGGCGGCTGATGCGCGAACTGCTGCCGGGCATT
CCCGAACTCAGCCCGTTCAACACCGAAGTGATGCGCTGGCGGCTGTTGGAACTGTTTTTTTCAGACGGCCTTTCCGCCCC
CGAATATTCTGCCGCGCGGCAGGCGTTGTCGGCCTACCTCTCCGGCGGCAGCGTCGCCGCCTACCAGCTCGCCGGGCAGC
TTGCCGATATTTTCGACCAATATCTGGTTTACCGCACCGACTGGATCGATGCCTGGCAAAACGGCCGCCTGATCGGCCTG
GGCGAAGACGAAATCTGGCAGGCCGAACTGTGGCGTTTCCTCGACGACGGCAGGCAAATCGCACCGCACCGCGTCGCCCT
TTGGCACAAACTGCTCGACGCACTCTCCGCGCCCGGAGCCAAGCTGCCCGAGCGGTTGTTCGTATTCGGCATCGCCACAC
TCGCCCCCATGTACCTGCAACTGTTGCAGGCCGTTGCCCAACACAGCGAAGTACACATCTTCGCCCTCAACCCGGCGGCC
GAATACTGGGGCAACATCATCGAACCGGCGCAAATGCTGCAAAACCCCGACGACACCGATTTAAGCCAAACCGGCCACCC
CCTGCTCGCCTCGCTGGGCAAACAGGGACGGGACTTCTTCAACGCCCTGACCGAAAGCGAACTGCATACCGACCTGCAGG
TGTACGCCGACGAACCGCTTTCAGACGGCCTCCTCCACCGCCTGCAGTACGACATCCAAACCCTCTCCCTGCCGGACGGC
ACGGCCGCTCTCGACGACAGCATCCGCATCGTCTGCGCCCACAGCCCGCTGCGCGAACTGCAAATCCTCAAAGAACACCT
GCTCCAACAGTTCGACCGCCATCCCGACCTGCAACCCCACGACATCGCCGTCCTCACGCCCGACATCGAACCCTACGTCC
CCTTTATCGAAGCCGTCTTCGGCGAACAAAGCGGACGGCCGCTGCCTTATTCCGTATCCGACGTCAAACTCAGCCGCCGC
CGTCCCCTGCTCCACGCACTGGAACAAGTGCTGGAACTGTTTGACAGCCGCTTCGAAGCCGACAAAGTAACCGCCCTGCT
CGACAGCGAACCCGTCCTCACCCGTTTCGGACTGACCCGCGAAGACCTCCCCCTGCTGCACGACACCATCGCAAGCCTCA
ACATCCACTGGGGGCTGGACGCGGAAATGCGCGACGGCGCAGACCCCCTGTTCACCTGGCAGCAAGGGCTCGACCGGCTC
GCCCTCGGCTGGCTGCTGCCCTACGGCGGCGGCCTGTGGCAAGGCATCAGCCCGTGGCACACCGACCCCGGCCACACCGC
CGTCCTCAGCCGTTTCGCCGCCTTCATCCGCCGCCTCGCCCATTGGCGGCAGATATGGATGCAGCCCGAAAACATCGGCG
GCTGGACGGAACGCGTCCGCAAGCTGGCCGGCGAACTCTTCACCCCCACGGAAGACGACGGCCAATCCGTGCGGCAGCTC
GAACAGGCACTCGCCCGCTGGCATCAGGAAGCCGAACTGGCCGGATTCGGCGGCAAACTGCCCTATTCCGTCATCAACCT
CCACCTCGCCCGCTTCCTCGGCAGCCAAAGCGAAACCGGCTTTTTGCGCGGCGGCATCACCTTCTGCAGCATGGTGCCCA
TGCGCTCCCTGCCCTTCAAAACCATCTGCCTGCTCGGCCTCAACGACGGCCTGTTCCCCCGCAACACCCGCGCCGCCGCC
TTCGACCTCATCGCCCGCCACCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTTCCTCGAATCGCT
CATCAGCGCGCGCGAACACCTCTACCTCTCCTACGTCGGCCGCAGCATCCGCACCAACGAAGCCCTCGCCCCCTCCGCCC
TGCTGAACGAATTGGCCGACTGCATCGCCGACATGACTGGCAAAAGCACCGCCGAACTCTACGCAGGCCAAATCGAACAA
CACCCCCTGCAAGCCTTCTCCACCCGCTACTTCGACGGCGGCAGCCTGAGCAGCAGCCGCCAAGACTACGCCGACGCACT
CAACAGGCCGTCTGAAAAACGCCCGCCCTTCTACACCCGCCCCCTGGAAGACGGCAAACCGCCGTTGTCCGTCAGCCAAA
ACGAACTGGCCGCCTTCTGGAAAAACCCGGTCAAACACTGGCTGCGGCACACACTCGACTGGCAGCCCCCCTACCTCGAA
GAAGCGGATAGCGCGGGCGAACCCTTCGCCCCGCCCAAAAGCCGCGAAATCGCCGCCGCCTACCTGCAGGCCCGGCGCGA
ACACCGCGACTTCGCCGACACCGCCGCCGAACTGACCGCGCAATCCATGCTGCCCGCCGGCCAACTCGGCACACTCTGGC
GCACCAACTTCGAAACCGCCGCCAAATCGCTGGAACAAGAAATCCTCGACAGCCCGAAACTGCCCGCCGCCCCCTACGAA
TACCTTTCAGACGGCCTCACCCTGCACGGCAGCCTGACCGCACTGCACCTGCACGGCCAAATCCACTTCCTCGACCACCG
GCCCAACGCCCCCGAAAAAATCGGCCTCTACCTGCAACACCTGATTTACAACACCGTCCGCCCTGCAGGCAGCGGCGACC
TCTCCAGTCGCTGGGTGCTGCCCGACGAAATCCTTACCCTGCCCCCCGTACCCGCCGGCCAAGCCGCAGAAATCCTCAAC
GGCTGGCTGGCCTACTACCTCATCGGCCAAACCCGCCCGCTGCCCTTCTTCCCCAAAACCAGCCTCGCCGCCGCGCAAAC
CCTGCTGTCCGAAAGCAAAAAAAGCGAAGACGAAAAGCTGCAGGCCGCCCGAAAAGCCGCCGCAACCCACTACTTCGGCG
GCAAAATGAACGTCGGCCAAGCCGACTACGCCGAAGTCGCCCTCGTCTTCGGCAAAGACGAAACACCGCCGATAGAAAGC
GAACTGTTTTGGCTGCTCGTCGAAAACCTCCTGCTGCCCACCCTGTCCGCATTGCAAGAGGCCGTCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(770-987)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

55.784

100

0.563

Multiple sequence alignment