Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV401_RS01260 Genome accession   NZ_CP031254
Coordinates   258398..259114 (-) Length   238 a.a.
NCBI ID   WP_114877187.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253398..264114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS01240 nrdR 253505..253954 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  DV401_RS01245 recC 254009..257389 (-) 3381 WP_114877185.1 exodeoxyribonuclease V subunit gamma -
  DV401_RS01250 comQ 257435..257722 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  DV401_RS01255 comP 257715..258398 (-) 684 WP_071163116.1 DUF2572 family protein Machinery gene
  DV401_RS01260 comO 258398..259114 (-) 717 WP_114877187.1 PulJ/GspJ family protein Machinery gene
  DV401_RS01265 comN 259114..259626 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  DV401_RS01270 suhB 259826..260629 (+) 804 WP_048951686.1 inositol-1-monophosphatase -
  DV401_RS01275 nrfE 260738..262645 (+) 1908 WP_071163115.1 heme lyase NrfEFG subunit NrfE -
  DV401_RS01280 - 262645..263175 (+) 531 WP_114877189.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26828.22 Da        Isoelectric Point: 9.7036

>NTDB_id=305084 DV401_RS01260 WP_114877187.1 258398..259114(-) (comO) [Haemophilus influenzae strain M25588]
MMKVLLKGQTLLALMISLSLSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNRCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=305084 DV401_RS01260 WP_114877187.1 258398..259114(-) (comO) [Haemophilus influenzae strain M25588]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGTCTTTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACACATGTTATTACATTTAAAGTTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGATGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCGCTCTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment