Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV401_RS01265 Genome accession   NZ_CP031254
Coordinates   259114..259626 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254114..264626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS01250 comQ 257435..257722 (-) 288 WP_012055313.1 DUF5374 domain-containing protein Machinery gene
  DV401_RS01255 comP 257715..258398 (-) 684 WP_071163116.1 DUF2572 family protein Machinery gene
  DV401_RS01260 comO 258398..259114 (-) 717 WP_114877187.1 PulJ/GspJ family protein Machinery gene
  DV401_RS01265 comN 259114..259626 (-) 513 WP_013526183.1 pilus assembly FimT family protein Machinery gene
  DV401_RS01270 suhB 259826..260629 (+) 804 WP_048951686.1 inositol-1-monophosphatase -
  DV401_RS01275 nrfE 260738..262645 (+) 1908 WP_071163115.1 heme lyase NrfEFG subunit NrfE -
  DV401_RS01280 - 262645..263175 (+) 531 WP_114877189.1 DsbE family thiol:disulfide interchange protein -
  DV401_RS01285 nrfF 263172..264326 (+) 1155 WP_071163113.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=305085 DV401_RS01265 WP_013526183.1 259114..259626(-) (comN) [Haemophilus influenzae strain M25588]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=305085 DV401_RS01265 WP_013526183.1 259114..259626(-) (comN) [Haemophilus influenzae strain M25588]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTATTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TTGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment