Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EXA09_RS14710 Genome accession   NZ_CP035812
Coordinates   3076368..3076997 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B7A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3071368..3081997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA09_RS14690 ycbZ 3071757..3073517 (-) 1761 WP_000156526.1 Lon protease family protein -
  EXA09_RS14695 matP 3073703..3074155 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EXA09_RS14700 ompA 3074231..3075283 (-) 1053 WP_000750419.1 porin OmpA -
  EXA09_RS14705 sulA 3075640..3076149 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EXA09_RS14710 sxy/tfoX 3076368..3076997 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EXA09_RS14715 yccS 3076960..3079122 (-) 2163 WP_000875015.1 YccS family putative transporter -
  EXA09_RS14720 yccF 3079132..3079578 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EXA09_RS14725 helD 3079701..3081755 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=305085 EXA09_RS14710 WP_000839153.1 3076368..3076997(+) (sxy/tfoX) [Escherichia coli strain B7A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305085 EXA09_RS14710 WP_000839153.1 3076368..3076997(+) (sxy/tfoX) [Escherichia coli strain B7A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment