Detailed information NTG0305072

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXA09_RS10580
• Genome accession: NZ_CP035812
• Coordinates: 2237409..2238401 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain B7A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2232409..2243401

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXA09_RS10550	ispD	2232470..2233180 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EXA09_RS10555	ispF	2233180..2233659 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXA09_RS10560	truD	2233656..2234705 (+)	1050	WP_001297149.1	tRNA pseudouridine(13) synthase TruD	-
EXA09_RS10565	surE	2234686..2235447 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EXA09_RS10570	pcm	2235441..2236067 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXA09_RS10575	nlpD	2236252..2237346 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EXA09_RS10580	rpoS	2237409..2238401 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXA09_RS10585	-	2238522..2238929 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
EXA09_RS10590	-	2239076..2239669 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EXA09_RS10595	-	2239669..2241095 (+)	1427	Protein_2074	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EXA09_RS10600	-	2241106..2241342 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EXA09_RS10605	ygbN	2241381..2242745 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305072 EXA09_RS10580 WP_000081550.1 2237409..2238401(+) (rpoS) [Escherichia coli strain B7A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305072 EXA09_RS10580 WP_000081550.1 2237409..2238401(+) (rpoS) [Escherichia coli strain B7A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715