Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   DV311_RS05030 Genome accession   NZ_CP031253
Coordinates   859389..861134 (-) Length   581 a.a.
NCBI ID   WP_114935359.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854389..866134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS05000 - 854871..855140 (-) 270 WP_003710331.1 HU family DNA-binding protein -
  DV311_RS05010 lon 855324..857774 (-) 2451 WP_114935357.1 endopeptidase La -
  DV311_RS05025 - 858258..859361 (+) 1104 WP_114935358.1 methyltransferase -
  DV311_RS05030 recD 859389..861134 (-) 1746 WP_114935359.1 exodeoxyribonuclease V subunit alpha Machinery gene
  DV311_RS05035 lolD 861202..861897 (-) 696 WP_114935360.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  DV311_RS05040 - 861890..863137 (-) 1248 WP_114935361.1 lipoprotein-releasing ABC transporter permease subunit -
  DV311_RS05045 - 863361..863639 (+) 279 WP_003709976.1 hypothetical protein -
  DV311_RS05050 recR 863695..864312 (-) 618 WP_162817173.1 recombination mediator RecR -
  DV311_RS05055 - 864379..865917 (-) 1539 WP_114935363.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62687.33 Da        Isoelectric Point: 6.5070

>NTDB_id=305055 DV311_RS05030 WP_114935359.1 859389..861134(-) (recD) [Neisseria lactamica strain M17106]
MERQTDEFAQAAARAAIRFLERYAGSGSEVLANCTERLFQALQNGHSFIRLSSGEAGALPALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPGTVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPALA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFPDTDG
FKKVAVSCLPDFEPAFALTVHKSQGSEYREVWLLPPSAGSSDDADDALSGLSRGLLYTAITRAREKFVFFGGEEAFRQAA
ATVKARQTALGSMLGRVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=305055 DV311_RS05030 WP_114935359.1 859389..861134(-) (recD) [Neisseria lactamica strain M17106]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAGAACGGTCATTCGTTTATCCGTTTGAGCAGTG
GCGAGGCTGGCGCGCTGCCGGCACTAGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGTGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGACAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTAATTACCGGCGGGCCGGGAACGGGCAAAACGACGACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGGGACCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTTCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGCGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGAGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGACAGGGCAGCCTTGCCGCCTATTTCCCCGATACGGACGGA
TTTAAAAAGGTTGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCTTTCGCGCTGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGTGAAGTTTGGCTGCTGCCGCCCTCCGCCGGCAGTTCGGACGACGCGGACGACGCGCTTTCGGGCTTGAGCAGAG
GGCTGCTTTACACAGCCATTACCCGCGCGAGGGAAAAGTTCGTATTTTTCGGCGGGGAAGAAGCCTTCCGGCAAGCCGCC
GCCACCGTCAAAGCGCGTCAGACGGCATTGGGCAGTATGCTTGGGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

92.771

100

0.928

Multiple sequence alignment