Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DV311_RS02835 Genome accession   NZ_CP031253
Coordinates   491849..495463 (-) Length   1204 a.a.
NCBI ID   WP_114935121.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 486849..500463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS02805 - 487349..487789 (+) 441 WP_114936053.1 hypothetical protein -
  DV311_RS02810 hemE 487943..489007 (+) 1065 WP_114935117.1 uroporphyrinogen decarboxylase -
  DV311_RS02815 radA 489197..490576 (+) 1380 WP_114935118.1 DNA repair protein RadA Machinery gene
  DV311_RS02820 - 490847..491326 (-) 480 WP_114935119.1 DUF302 domain-containing protein -
  DV311_RS02830 - 491451..491810 (-) 360 WP_114935120.1 rhodanese-like domain-containing protein -
  DV311_RS02835 recB 491849..495463 (-) 3615 WP_114935121.1 exodeoxyribonuclease V subunit beta Machinery gene
  DV311_RS02840 - 495696..496604 (-) 909 WP_114935122.1 Dyp-type peroxidase -
  DV311_RS02845 - 496840..497667 (+) 828 WP_081462499.1 amino acid ABC transporter substrate-binding protein -
  DV311_RS02850 - 497657..498373 (+) 717 WP_025457234.1 amino acid ABC transporter permease -
  DV311_RS02855 - 498383..499138 (+) 756 WP_114935123.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134313.84 Da        Isoelectric Point: 5.4748

>NTDB_id=305049 DV311_RS02835 WP_114935121.1 491849..495463(-) (recB) [Neisseria lactamica strain M17106]
MSASIRAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAELGDDTLSDGIAAYCAEHHEGDAFLPTLLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLVPAQDFWRERVSNDPLLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQTDLPQARDAALAS
WQNICGNLAELKETFWRIHPLLNGNSYRKNSFAELFDALEQKALSPDLPFLEAKLHDRLLKLASDKLKAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGCPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNKYGIFAAMQQFSQTHGIETHLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGLPQDSRETVRCAYACEKDGIAMLKRNW
QRLTDNAPSGTDFAFTEDVPPPAVYCGNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYGLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFVDMVCQDPDGNICVI
DYKSNHLGTDASAYTRQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGTDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=305049 DV311_RS02835 WP_114935121.1 491849..495463(-) (recB) [Neisseria lactamica strain M17106]
ATGTCTGCAAGCATCCGAGCATTCGACCCACTAACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACACGTTTGATCGTATTAGAACAAAAAAGCGTCGAACGCGTATTGGTCG
TTACCTTCACCAAAGCCGCCACCGCCGAGCTGAAAACACGCCTGCGCGCACGTTTGGACGATGTGTTGCAGGTTTTGGAA
AGCAAAGAAATTGCCGAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CGCCTTCCTGCCCACACTCTTAAAACAGGCTTTGCAAAAAGAAGGCCGGACGCGCCTGATTGTCCGCCTCAAAGCCGCCA
TCGGGCAATTCGACAACGCTGCCATCTATACCATACACGGCTTCTGCCAGCGTATCCTGCGCGATTACGCCTTTTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGTTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAAACCGATTTGCCGCAAGCCCGGGATGCCGCTTTGGCAAGC
TGGCAAAACATTTGCGGAAATCTGGCTGAATTAAAAGAAACTTTTTGGCGCATCCATCCCCTTTTAAACGGCAATTCATA
TCGGAAAAACAGTTTTGCCGAACTGTTTGACGCGTTGGAACAAAAAGCCCTGTCGCCGGATTTGCCCTTTTTGGAGGCAA
AGCTGCACGACAGGCTCTTGAAACTTGCGTCCGACAAACTCAAAGCTGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGTGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATAAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCACTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATTGATGAATTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGCCCGCTGTTTCTGGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGTTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCCCCCGAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTACGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTGTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATAAATACGGCATTTTCGCCGCTATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCACCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAACTATTTCCAACTGCTCGAACTGCTTGCTGCCGAAGACGCGCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTGGCCGGCAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACTATGCACGCCTCAAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCCAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGACGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAGGAACAGCTCAACATCTACGCCGCATACTCCACCAATACCGCCGACAACCCCCTCGCCTACCTAATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCTGTGCCTATGCGTGTGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CAGCGTTTGACGGACAACGCCCCTTCCGGCACGGATTTCGCCTTCACAGAAGATGTGCCGCCCCCTGCCGTATATTGCGG
CAATGCCGGTCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCATACCCAGACGCCCGACGGCGGGGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTGCCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCAATACACGACTTTCCGAAAGGTACGCAGGCGGG
GCTATGCCTGCACGAAATCCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCCTCATTGCCGACAAGC
TGAAAAAATACGGTTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCCTGCCGCAAAACGCCGCTGACG
GGGGCATACGGCCTGTCCGACATCCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
CCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTGCCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTGTCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAATCAAACCACCTCGGCACGGATGCATCCGCCTACACGCGGCAGGCGATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCGCCGCGCGCTATTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGCACAGACGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

92.525

100

0.925

Multiple sequence alignment