Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV311_RS02815 Genome accession   NZ_CP031253
Coordinates   489197..490576 (+) Length   459 a.a.
NCBI ID   WP_114935118.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 484197..495576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS02795 - 484735..486096 (+) 1362 WP_162817104.1 uroporphyrinogen-III C-methyltransferase -
  DV311_RS02800 - 486093..487316 (+) 1224 WP_078835916.1 heme biosynthesis protein HemY -
  DV311_RS02805 - 487349..487789 (+) 441 WP_114936053.1 hypothetical protein -
  DV311_RS02810 hemE 487943..489007 (+) 1065 WP_114935117.1 uroporphyrinogen decarboxylase -
  DV311_RS02815 radA 489197..490576 (+) 1380 WP_114935118.1 DNA repair protein RadA Machinery gene
  DV311_RS02820 - 490847..491326 (-) 480 WP_114935119.1 DUF302 domain-containing protein -
  DV311_RS02830 - 491451..491810 (-) 360 WP_114935120.1 rhodanese-like domain-containing protein -
  DV311_RS02835 recB 491849..495463 (-) 3615 WP_114935121.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49466.98 Da        Isoelectric Point: 7.8821

>NTDB_id=305048 DV311_RS02815 WP_114935118.1 489197..490576(+) (radA) [Neisseria lactamica strain M17106]
MAKTLKTLYQCTGCGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGTAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPKLKIHGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=305048 DV311_RS02815 WP_114935118.1 489197..490576(+) (radA) [Neisseria lactamica strain M17106]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGGATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCTTAGCCGCGCCCGAACCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACTGCGACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGTTGCT
GCTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCGACCGACGGCGTAAACCTGCTTGCCGAAATCCGTATGGAGGCGATTCAGACGGCC
TTGAAACAACACCAGCCCGAAGTTGTCGTCATCGACTCTATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGTATGGCGAAACAGATGGGCACCGCTATGATATTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGTTGGAGCATATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGAATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCGAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGATACGCCCGGCTCGT
GCGTTTTGGTTACACAAGAAGGTAGCCGCCCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGTCTTGCGATGCTGCTTGCCGTGTTAAACCGACACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTCCTCAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGACTAAGCGGAGAA
GTCCGCCCCGTCGCGCGTGGGCAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTCCCCAAGCTGAAAATCCACGGCGTTTCGAGTTTGCAGGAAGCCATTGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.439

99.346

0.501
  radA Streptococcus mitis NCTC 12261

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.007

98.257

0.462

Multiple sequence alignment