Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV446_RS11175 Genome accession   NZ_CP031252
Coordinates   2204549..2205355 (+) Length   268 a.a.
NCBI ID   WP_003772083.1    Uniprot ID   D4DQW1
Organism   Neisseria elongata strain M15911     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2198016..2205355 2204549..2205355 within 0


Gene organization within MGE regions


Location: 2198016..2205355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS11130 - 2198016..2198459 (-) 444 WP_114910543.1 phage virion morphogenesis protein -
  DV446_RS11135 - 2198462..2199364 (-) 903 WP_114910544.1 phage minor head protein -
  DV446_RS11140 - 2199361..2199798 (-) 438 WP_240317864.1 phage portal protein family protein -
  DV446_RS11145 - 2199834..2199938 (-) 105 Protein_2131 phage major tail tube protein -
  DV446_RS11150 - 2200058..2200492 (+) 435 WP_074897166.1 DNA adenine methylase -
  DV446_RS11155 - 2200609..2201019 (-) 411 WP_074897168.1 hypothetical protein -
  DV446_RS11160 - 2201118..2201576 (-) 459 WP_074897169.1 DUF5339 family protein -
  DV446_RS11165 ubiB 2201768..2203279 (+) 1512 WP_074897171.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  DV446_RS11170 rluD 2203432..2204550 (-) 1119 WP_074897173.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV446_RS11175 comL 2204549..2205355 (+) 807 WP_003772083.1 outer membrane protein assembly factor BamD Machinery gene

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31154.04 Da        Isoelectric Point: 7.9526

>NTDB_id=305035 DV446_RS11175 WP_003772083.1 2204549..2205355(+) (comL) [Neisseria elongata strain M15911]
MKKILLVVALGIALGGCAANKGTSDKDAQITQDWPVEKLYAEAQDELNSSNYTRAVKLYELLESRFPQGRYAQQAQLDTA
YAYYKDEEREKALAAVERFQRLHPQHPNMDYALYLKGLILFNEDKSFLNKLASQDWSDRDPKANREAYQAFAELVQRYPQ
SKYVEEASKQMEKLVDALAGNEISVARYYAKRGAHLAAANRAQNIITGFQNTRFTEEALAIMEVSYRKMNRQQLADDTRR
ILQQNFPQSPYLQQEWRSDDAPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=305035 DV446_RS11175 WP_003772083.1 2204549..2205355(+) (comL) [Neisseria elongata strain M15911]
ATGAAAAAAATTCTTTTAGTAGTAGCTTTGGGTATCGCGCTGGGCGGTTGTGCCGCCAACAAGGGAACTTCCGACAAAGA
TGCGCAGATTACCCAGGATTGGCCGGTCGAGAAGTTGTATGCCGAGGCGCAAGATGAGTTAAACAGCAGCAATTATACGC
GGGCTGTCAAGTTATATGAACTTTTGGAATCGCGTTTCCCTCAGGGGCGTTATGCGCAGCAGGCTCAGTTGGACACGGCC
TATGCCTACTACAAGGACGAGGAGCGCGAAAAAGCATTGGCGGCGGTCGAGCGTTTCCAACGCCTGCATCCGCAGCATCC
GAATATGGATTATGCCCTTTATCTGAAGGGTTTGATTTTGTTTAACGAGGACAAATCGTTCTTGAACAAGCTGGCTTCAC
AAGACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAGGCCTATCAGGCGTTTGCCGAGCTGGTTCAACGCTATCCTCAG
AGCAAATATGTTGAAGAAGCGTCCAAGCAGATGGAAAAACTGGTGGATGCGCTGGCGGGTAACGAAATTTCCGTCGCCCG
TTATTACGCCAAACGCGGCGCGCATCTGGCCGCGGCCAACCGTGCGCAGAATATCATTACCGGCTTCCAGAATACCCGCT
TCACGGAAGAGGCCTTGGCGATTATGGAGGTTTCTTACCGTAAGATGAACCGCCAGCAGTTGGCGGACGATACCCGCCGC
ATTTTGCAGCAAAACTTCCCGCAAAGCCCTTATTTGCAGCAGGAATGGAGGAGCGACGATGCGCCGTGGTGGCGTTATTG
GAAATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DQW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

76.404

99.627

0.761
  comL Neisseria gonorrhoeae MS11

75.281

99.627

0.75

Multiple sequence alignment