Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DV446_RS03375 Genome accession   NZ_CP031252
Coordinates   658943..662131 (+) Length   1062 a.a.
NCBI ID   WP_074894488.1    Uniprot ID   A0A378TWV8
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 653943..667131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS03345 gshA 654190..655527 (-) 1338 WP_074894476.1 glutamate--cysteine ligase -
  DV446_RS03350 leuC 655747..657153 (+) 1407 WP_074894479.1 3-isopropylmalate dehydratase large subunit -
  DV446_RS03355 - 657181..657651 (+) 471 WP_074894481.1 hypothetical protein -
  DV446_RS03360 - 657703..658140 (+) 438 WP_162817030.1 hypothetical protein -
  DV446_RS03365 - 658163..658477 (+) 315 WP_074894484.1 hypothetical protein -
  DV446_RS12630 - 658764..658841 (+) 78 Protein_646 GAD-like domain-containing protein -
  DV446_RS03375 recC 658943..662131 (+) 3189 WP_074894488.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DV446_RS12465 - 662341..662871 (-) 531 WP_240317906.1 hypothetical protein -
  DV446_RS12470 - 662933..663421 (-) 489 WP_240317907.1 hypothetical protein -
  DV446_RS03385 - 663489..664262 (-) 774 WP_074894490.1 TatD family hydrolase -
  DV446_RS03390 - 664291..664704 (-) 414 WP_114910508.1 YadA-like family protein -

Sequence

Protein


Download         Length: 1062 a.a.        Molecular weight: 118971.85 Da        Isoelectric Point: 5.0657

>NTDB_id=305014 DV446_RS03375 WP_074894488.1 658943..662131(+) (recC) [Neisseria elongata strain M15911]
MLHLYQSNRLEDLAELLWKIQESSPLSDPLQEEEILVQSQGMRRFIEHALAKSGGIAANLRFSLPAGFNWRLMRELLPGI
PELSPFNTEVMRWRLLELFFSDGLSAPEYSAARQALSAYLSGGSVAAYQLAGQLADIFDQYLVYRPDWIDAWQNGRLIGL
GEDEIWQVELWRFLDDGRQIAPHRVALWHKLLDALSAPGAKLPERLFVFGIATLAPMYLQLLQAVAQHSEVHIFALNPAA
EYWGNIIEPAQMLQNPDDTDLSQTGHPLLASLGKQGRDFFNALTESELHTDLQVYADEPLSDGLLHRLQHDIQTLSLPDG
TAAPDDSIRIVCAHSPLRELQILKEHLLEQFDRHPDLQPHDIAVLTPDIEPYVPFIEAVFGEQSGRPLPYSVSDVKLSHR
RPLLHALEQVLELFDSRFEADKVTALLDSEPVLARFGLTREDLPLLHDTIASLNIHWGLDAEMRDGTDPLFTWQQGLDRL
ALGWLLPGGGGLWQGISPWHTDPGHTAVLSRFAAFIRRLAHWRQIWMQPENIGGWTERVRKLAGELFTPTEDDGQSLRQL
EQALARWHQEAELAGFGGKLPYSVINLHLAHFLGSQSETGFLRGGITFCSMVPMRSLPFKTICLLGLNDGLFPRNTRAAA
FDLIARHPEKGDRARRDDDRYLFLESLISAREHLYLSYVGRSIRTNEALAPSALLNELADCIADMTGKSTAELYAGQIEQ
HPLQAFSTRYFDGGSLSSSRQDYADALNRPSEKRPPFYTNPLEKGEPPLSVSQNELTAFWKNPVKHWLRHTLDWQTPYLE
EADSAGEPFAPPKSREISAAYLQTRREHRDFADTAAELTAQSMLPAGQLGTLWRTNFETAAKSLEQEILDSPKLPAAPYE
YLSDGLTLHGSLTALHLHGQIHFLDHRPNAPEKIGLYLQHLIYNTVRPAGSGDLSSRWVLPDEILTLPPVPAGQAAEILN
GWLAYYLIGQTRPLPFFPKTGLAAAQTLLSESKKSEDEKLQAARKAAATHYFGGKMNVGQADYAEVALVFGNDETPPIES
ELFWLLVENLLLPTLSALQEAV

Nucleotide


Download         Length: 3189 bp        

>NTDB_id=305014 DV446_RS03375 WP_074894488.1 658943..662131(+) (recC) [Neisseria elongata strain M15911]
ATGCTCCACCTCTACCAATCCAACCGCCTCGAAGACCTTGCCGAACTATTGTGGAAAATACAGGAAAGCAGCCCGCTGTC
CGACCCGTTGCAGGAAGAGGAAATCCTGGTGCAAAGCCAAGGCATGCGCCGCTTTATCGAACACGCGCTGGCCAAAAGCG
GCGGCATCGCGGCCAACCTCCGCTTTTCGCTGCCGGCCGGTTTCAACTGGCGGCTGATGCGCGAACTGCTGCCGGGCATT
CCCGAACTCAGCCCGTTCAACACCGAAGTGATGCGCTGGCGGCTGTTGGAACTGTTTTTTTCAGACGGCCTTTCCGCCCC
CGAATATTCCGCCGCGCGGCAGGCGTTGTCGGCCTACCTCTCCGGCGGCAGCGTCGCCGCCTACCAGCTCGCCGGACAGC
TTGCCGATATTTTCGACCAATATCTGGTTTACCGCCCCGACTGGATCGATGCCTGGCAAAACGGCCGCCTGATCGGCCTG
GGCGAAGACGAAATCTGGCAGGTCGAACTGTGGCGTTTCCTCGACGACGGCAGGCAAATCGCACCGCACCGCGTCGCTCT
GTGGCACAAACTGCTCGACGCACTCTCCGCGCCCGGAGCCAAGCTGCCCGAGCGGTTGTTCGTATTCGGCATCGCCACAC
TCGCCCCCATGTACCTGCAACTGTTGCAGGCCGTTGCCCAGCACAGCGAAGTACACATCTTCGCCCTCAACCCGGCGGCC
GAATACTGGGGCAACATCATCGAACCGGCGCAAATGCTGCAAAACCCCGACGACACCGATTTAAGCCAAACCGGCCACCC
CCTGCTCGCCTCGCTGGGCAAACAGGGGCGGGACTTCTTCAACGCCCTGACCGAAAGCGAACTGCATACCGACCTGCAAG
TGTACGCCGACGAACCGCTTTCAGACGGCCTCCTCCACCGCCTGCAGCACGACATCCAAACCCTCTCCCTGCCCGACGGC
ACGGCCGCACCCGACGACAGCATCCGCATCGTCTGCGCCCACAGCCCGCTGCGCGAACTGCAAATCCTCAAAGAACACCT
GCTCGAACAGTTCGACCGCCATCCCGACCTGCAACCCCACGACATCGCCGTCCTCACACCCGACATCGAACCCTACGTCC
CCTTTATCGAAGCCGTCTTCGGCGAACAAAGCGGACGGCCGCTGCCTTATTCCGTATCCGACGTCAAACTCAGCCACCGC
CGTCCCCTGCTCCACGCGCTGGAACAAGTGCTGGAACTGTTCGACAGCCGCTTCGAAGCCGACAAAGTAACCGCCCTGCT
CGACAGCGAACCCGTCCTCGCCCGTTTCGGACTGACCCGCGAAGACCTTCCCCTGTTGCACGACACCATCGCAAGCCTCA
ACATCCACTGGGGGCTGGACGCGGAAATGCGCGACGGCACAGACCCCCTGTTCACCTGGCAGCAAGGGCTCGACCGGCTC
GCCCTCGGCTGGCTGCTGCCCGGCGGCGGCGGCCTGTGGCAAGGCATCAGCCCGTGGCACACCGACCCCGGCCACACCGC
CGTCCTCAGCCGTTTCGCCGCCTTCATCCGCCGCCTCGCCCATTGGCGGCAGATATGGATGCAGCCCGAAAACATCGGCG
GCTGGACGGAACGCGTCCGCAAGCTGGCCGGCGAACTCTTCACCCCCACCGAAGACGACGGCCAATCCCTACGGCAGCTC
GAACAGGCACTCGCCCGCTGGCATCAGGAAGCCGAACTGGCCGGATTCGGCGGCAAACTGCCCTACTCCGTCATCAACCT
CCACCTCGCCCACTTCCTCGGCAGCCAAAGCGAAACCGGCTTTTTGCGCGGCGGCATCACCTTCTGCAGCATGGTACCCA
TGCGCTCCCTGCCCTTCAAAACCATCTGCCTGCTCGGCCTCAACGACGGCCTGTTCCCCCGCAACACCCGCGCCGCCGCC
TTCGACCTCATCGCCCGCCACCCGGAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTTCCTCGAATCCCT
CATCAGCGCGCGCGAACACCTCTACCTCTCCTACGTCGGCCGCAGCATCCGCACCAACGAAGCCCTCGCCCCCTCCGCAC
TGCTGAACGAATTGGCCGACTGCATCGCCGACATGACCGGCAAAAGCACCGCCGAACTCTACGCAGGCCAAATCGAACAA
CACCCCCTGCAAGCCTTCTCCACCCGCTACTTCGACGGCGGCAGCCTGAGCAGCAGCCGCCAAGACTACGCCGACGCACT
CAACAGGCCGTCTGAAAAACGCCCGCCCTTCTACACCAACCCATTAGAAAAAGGCGAACCGCCGTTGTCCGTCAGCCAAA
ACGAACTGACCGCCTTCTGGAAAAACCCGGTCAAACACTGGCTGCGGCACACACTCGACTGGCAGACCCCCTACCTCGAA
GAAGCGGATAGCGCGGGCGAACCTTTCGCCCCGCCCAAAAGCCGCGAAATCTCCGCCGCCTACCTGCAGACCCGGCGCGA
ACACCGCGACTTCGCCGACACCGCCGCCGAACTGACCGCGCAATCCATGCTGCCCGCCGGCCAACTCGGCACACTCTGGC
GCACCAACTTCGAAACCGCCGCCAAATCGCTGGAACAAGAAATCCTCGACAGCCCGAAACTGCCCGCCGCCCCCTACGAA
TACCTTTCAGACGGCCTCACCCTGCACGGCAGCCTGACCGCGCTGCACCTGCACGGCCAAATCCACTTCCTCGACCACCG
GCCCAACGCCCCCGAAAAAATCGGCCTCTACCTGCAACACCTGATTTACAACACCGTCCGTCCCGCAGGCAGCGGCGACC
TCTCCAGCCGCTGGGTGCTGCCCGATGAAATCCTCACCCTGCCCCCCGTACCCGCCGGCCAAGCCGCAGAAATCCTCAAC
GGCTGGCTGGCCTACTACCTCATCGGCCAAACCCGCCCGCTGCCCTTCTTCCCCAAAACCGGCCTCGCCGCCGCGCAAAC
CCTGCTGTCCGAAAGCAAAAAAAGCGAAGACGAAAAGCTGCAGGCCGCCCGAAAAGCCGCCGCAACCCACTACTTCGGCG
GCAAAATGAACGTCGGCCAAGCCGACTACGCCGAAGTCGCCCTCGTCTTCGGCAACGACGAAACGCCGCCGATAGAAAGC
GAACTGTTTTGGCTGCTCGTCGAAAACCTCCTGCTGCCCACCCTGTCCGCATTGCAAGAGGCCGTCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(770-987)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378TWV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

55.597

100

0.561

Multiple sequence alignment