Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DV446_RS03170 Genome accession   NZ_CP031252
Coordinates   616426..619995 (+) Length   1189 a.a.
NCBI ID   WP_074894421.1    Uniprot ID   A0A378TYB7
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 611426..624995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS03150 - 612801..614120 (+) 1320 WP_074894413.1 DUF445 domain-containing protein -
  DV446_RS03155 - 614322..615182 (+) 861 WP_074894415.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  DV446_RS03160 - 615274..615729 (+) 456 WP_074894417.1 WG repeat-containing protein -
  DV446_RS03165 greB 615801..616289 (-) 489 WP_074894419.1 transcription elongation factor GreB -
  DV446_RS03170 recB 616426..619995 (+) 3570 WP_074894421.1 exodeoxyribonuclease V subunit beta Machinery gene
  DV446_RS03175 - 620074..620346 (+) 273 WP_074894423.1 accessory factor UbiK family protein -
  DV446_RS03180 - 620447..621472 (+) 1026 WP_074894425.1 ABC transporter substrate-binding protein -
  DV446_RS03185 - 621682..622587 (+) 906 WP_003770739.1 ABC transporter permease -
  DV446_RS03190 - 622584..623378 (+) 795 WP_003770738.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1189 a.a.        Molecular weight: 133905.47 Da        Isoelectric Point: 6.0221

>NTDB_id=305012 DV446_RS03170 WP_074894421.1 616426..619995(+) (recB) [Neisseria elongata strain M15911]
MSRSILPFDPLTVPVQGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAATAELKTRLRGRLDEAFRRIR
GDKMDEEADDFMRGLLEQAARQETPERLELRLKAALSQFDNAAIYTIHGFCQRLLGDYAFLCQVPFETSSADDNDKRDLN
TYAQDFWRQNVSHDAQNARLAFHADLTPDQVLQQFSRYLGRPDLLFRRPQTDLAAETERAQAVWTELQQRFPELKDLFWR
VHPMLHQGWFKQPDYEEKLNKLTELLKQDQIPTEWIVKNLKNKNKKRVFSTEYLLNAAKKNSPLSNGELAELSFFDRTLT
AAESLLDAEQQALIALQLDCLQYVRRTAAEQRATRQERSPDDLLLDVYHALTAGAHRDKLAEAVSQNWRVALIDEFQDTD
PLQYEIFRRTFAAHGNPLFLVGDPKQAIYGFRGADIYAYLQAAADTPVHYTLAHNYRSHSLLIDNIGRLFQQKERPFVLE
HIGYPAVTAPRTTSRLTPPQAALKIRWLNDGGEPDPNKETLRSRAAEYCADEIAALINQAAEGRLNYKNIPAEAGQIAVL
VHSHNQGAMIKRTLAARGIPSVSIERESVFAGEEAKALAALLGFWLDPRRTEPLRFILAGILFGQTAEQLHALNRDEALL
SGYISAAEDFLQIWQRQGIYAALTAFARRYGLEGRLLAADGGRTLTNFWQLAELLADENENSHTPAALHQWLLAQIQDPP
QNENAVLRLESDEALVKIVTIHASKGLQYPFVFCPFSWDTAEKKNEAWHILHRENGSELLADSQLDEADREQLDDEDLGE
RLRLLYVALTRAEEQLVIYAARCSSTPRNTFAYLLEGLPSDGRLKARQAYEAEKENQTEMLRRNWLRWINAAPESIEWQE
GAPLSAAVQTRRRSGTEYRAAVYPPRRFSFVRHTSFTGLTRYLGHGPAKPDDDDGLQPALDPAELSADSLLPLPDTDNAP
RDIFHFPRGAAAGICLHEILEKHDFAHPAGQQRENIAAILEKHGIETEWLDAVCLMADQTAAAPLHGGTTLSALPAARRK
AEMGFVMHFDRLELGRLKNHLAAAGLPEACTAAAERLDFPTLQGFLNGFIDLTCLLPDGTACIIDYKSNHLGMDTDGYTQ
SALDQAVADHHYYLQAWIYALAAARHLKQRGQMPRTVRIRYLFLRGLDSGGRNGIWSWDIPTASLAEWL

Nucleotide


Download         Length: 3570 bp        

>NTDB_id=305012 DV446_RS03170 WP_074894421.1 616426..619995(+) (recB) [Neisseria elongata strain M15911]
ATGTCCCGCAGCATCCTCCCGTTCGACCCGCTGACCGTCCCCGTACAAGGCACCGCCTTAATCGAAGCCTCCGCCGGCAC
CGGCAAAACCTACGGCATCGCCGCCCTCTTCGCCCGCCTGATCCTGCTGGAAAAGCTGCCTGTGGACAAAGTGCTGGTGG
TTACCTTCACCAAAGCCGCCACCGCCGAACTGAAAACCCGCCTGCGCGGCCGTTTGGACGAAGCCTTCCGCCGGATACGC
GGCGACAAAATGGACGAAGAAGCCGACGATTTCATGCGCGGCCTGCTCGAACAGGCGGCGCGGCAGGAAACGCCCGAACG
GCTGGAACTGCGCCTGAAAGCCGCGCTGTCGCAGTTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAACGCC
TGCTGGGCGACTACGCCTTCCTCTGCCAAGTGCCGTTTGAAACCTCTTCCGCCGACGACAACGACAAACGCGATCTGAAC
ACCTACGCGCAGGATTTCTGGCGGCAAAACGTGTCGCACGACGCGCAAAACGCCCGCCTCGCCTTTCATGCCGACCTCAC
GCCCGACCAGGTATTGCAACAGTTTTCCCGCTACCTCGGCCGCCCCGACCTGCTTTTCAGACGGCCTCAAACCGATTTGG
CCGCCGAAACGGAGCGGGCGCAGGCGGTTTGGACGGAACTGCAACAGCGTTTCCCCGAACTGAAAGACCTGTTCTGGCGT
GTGCATCCCATGTTGCATCAGGGTTGGTTTAAACAACCCGATTATGAAGAGAAACTTAATAAATTAACTGAGCTTCTCAA
GCAAGATCAGATACCTACAGAATGGATAGTAAAAAACCTAAAAAATAAGAATAAAAAACGTGTATTCTCTACAGAATACC
TTCTCAATGCAGCTAAAAAAAATAGTCCACTATCTAATGGGGAATTAGCCGAACTTAGCTTTTTTGATCGCACGCTTACT
GCGGCAGAAAGCCTGCTCGATGCCGAACAACAGGCACTTATCGCCCTGCAACTCGACTGCCTGCAATACGTCCGCCGCAC
CGCCGCCGAACAGCGGGCGACGCGGCAGGAACGCAGTCCCGACGACCTGCTGCTCGACGTTTACCACGCCCTCACCGCCG
GCGCGCACCGAGACAAACTCGCCGAAGCCGTCTCGCAAAACTGGCGCGTTGCCCTGATAGACGAATTCCAAGACACCGAC
CCGCTGCAATACGAAATCTTCCGCCGCACCTTTGCCGCCCACGGCAACCCGCTCTTCCTCGTCGGCGACCCCAAACAGGC
GATTTACGGCTTTCGCGGCGCGGACATCTACGCCTACCTCCAAGCCGCCGCCGACACCCCCGTCCACTACACCCTCGCGC
ACAACTACCGCAGCCACAGCCTGCTCATCGACAACATCGGCCGCCTGTTCCAACAGAAAGAACGCCCCTTCGTCCTCGAA
CACATCGGCTACCCGGCCGTTACCGCCCCGCGCACGACAAGCCGCCTCACCCCGCCGCAGGCGGCATTGAAAATCCGCTG
GCTGAACGACGGCGGCGAACCCGACCCCAACAAAGAAACCCTCCGCAGCCGCGCAGCCGAATACTGCGCCGACGAAATCG
CCGCCCTGATCAACCAAGCGGCGGAAGGCCGTCTGAATTACAAAAACATTCCGGCGGAAGCCGGCCAAATCGCCGTTTTG
GTCCATAGCCACAACCAAGGCGCGATGATAAAGCGCACCTTGGCCGCACGCGGCATCCCCAGCGTATCGATAGAGCGCGA
ATCCGTATTTGCCGGCGAAGAAGCCAAAGCCCTGGCCGCCCTGCTCGGCTTCTGGCTCGACCCCCGCCGCACCGAACCCC
TGCGCTTCATCCTCGCCGGCATCCTGTTCGGTCAAACCGCCGAACAACTCCATGCCCTCAACCGCGACGAAGCCCTGCTG
TCCGGATACATCTCCGCCGCCGAAGATTTCCTGCAAATTTGGCAGCGGCAGGGCATCTACGCCGCCCTGACCGCCTTCGC
CCGCCGCTACGGCCTCGAAGGCAGGCTGCTGGCCGCAGACGGCGGACGCACCCTGACCAACTTCTGGCAGCTGGCCGAAC
TTTTGGCCGACGAAAACGAAAACAGCCACACCCCCGCCGCGCTGCACCAATGGCTGCTGGCCCAAATCCAAGACCCGCCC
CAAAACGAAAACGCCGTCCTACGGCTGGAAAGCGACGAGGCACTGGTCAAAATCGTAACCATCCATGCCTCCAAAGGCCT
GCAATATCCCTTCGTGTTCTGCCCGTTCTCCTGGGACACCGCCGAAAAGAAAAACGAAGCATGGCACATCCTCCACCGCG
AAAACGGCAGCGAACTGCTTGCCGACAGCCAGCTCGACGAAGCCGACCGCGAACAGCTCGACGACGAAGACCTGGGCGAA
CGCCTTCGCCTGCTCTACGTCGCCCTCACCCGCGCCGAAGAACAACTCGTCATCTATGCCGCCCGCTGCAGCAGTACCCC
GCGCAACACCTTTGCCTACCTGCTCGAAGGCCTGCCTTCAGACGGCCGTCTGAAAGCCCGCCAAGCCTACGAAGCCGAGA
AAGAAAACCAGACCGAAATGCTGCGCCGCAACTGGCTGCGCTGGATAAACGCCGCCCCCGAAAGCATCGAATGGCAGGAA
GGCGCACCCCTTTCGGCAGCCGTGCAAACCCGCCGCCGCAGCGGCACCGAATACCGCGCCGCCGTTTACCCGCCCCGCCG
TTTCAGCTTCGTCCGCCACACCAGCTTTACCGGCCTCACCCGCTACCTCGGCCACGGCCCAGCCAAGCCCGATGACGACG
ACGGGCTGCAACCCGCGCTCGACCCGGCCGAACTGTCCGCCGACAGCCTTCTGCCGCTTCCCGACACGGACAACGCCCCG
CGCGACATCTTCCACTTTCCCCGCGGCGCGGCCGCCGGCATCTGCCTGCACGAAATCCTCGAAAAACACGACTTCGCCCA
CCCCGCCGGACAACAGCGCGAAAACATCGCCGCCATATTGGAAAAACACGGCATCGAAACCGAATGGCTGGATGCCGTCT
GCCTCATGGCCGACCAAACCGCCGCCGCACCACTGCACGGCGGCACCACCCTCTCAGCCCTCCCCGCCGCCCGCCGCAAA
GCGGAAATGGGCTTCGTCATGCACTTCGACCGTTTGGAATTAGGCCGTCTGAAAAACCATCTTGCCGCAGCAGGCCTGCC
CGAAGCCTGCACCGCCGCCGCAGAACGGCTGGACTTCCCCACCCTGCAAGGCTTCCTCAACGGCTTCATCGACCTGACCT
GCCTGCTGCCCGACGGCACGGCCTGCATCATCGACTACAAATCCAACCACCTGGGCATGGACACCGACGGCTACACCCAA
TCCGCCCTCGACCAAGCCGTCGCCGACCACCACTACTACCTCCAAGCCTGGATATACGCCCTTGCCGCCGCCCGCCACCT
CAAACAGCGCGGACAGATGCCCCGCACCGTCCGCATCCGCTACCTCTTCCTGCGCGGACTCGATTCCGGCGGCCGCAACG
GCATCTGGTCGTGGGACATCCCCACCGCCTCACTGGCCGAATGGCTGTAG

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1065-1165)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-445)

UvrD-like helicase C-terminal domain (UvrD_C)

(450-820)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378TYB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

50.535

100

0.516

Multiple sequence alignment