Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV446_RS01330 Genome accession   NZ_CP031252
Coordinates   261730..263115 (+) Length   461 a.a.
NCBI ID   WP_074896009.1    Uniprot ID   A0A378TWX9
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 256730..268115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS01310 - 258180..258701 (-) 522 WP_003771657.1 RNA pyrophosphohydrolase -
  DV446_RS01315 - 259021..260160 (+) 1140 WP_074895991.1 polyamine ABC transporter substrate-binding protein -
  DV446_RS01320 - 260252..260974 (+) 723 WP_003771648.1 SDR family oxidoreductase -
  DV446_RS01325 - 261095..261649 (+) 555 WP_074895994.1 hypothetical protein -
  DV446_RS01330 radA 261730..263115 (+) 1386 WP_074896009.1 DNA repair protein RadA Machinery gene
  DV446_RS01335 - 263262..265328 (-) 2067 WP_114910504.1 J domain-containing protein -
  DV446_RS01340 - 265407..266324 (-) 918 WP_074896011.1 WG repeat-containing protein -
  DV446_RS01345 - 266398..267465 (-) 1068 WP_074896014.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49671.16 Da        Isoelectric Point: 6.8217

>NTDB_id=305008 DV446_RS01330 WP_074896009.1 261730..263115(+) (radA) [Neisseria elongata strain M15911]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNEKEFPNLKIFGVSSLQEAIEICRDAENSA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=305008 DV446_RS01330 WP_074896009.1 261730..263115(+) (radA) [Neisseria elongata strain M15911]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCCTAGCCGCGCCCGAACCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGTGAACTCGAC
CGCGTATTGGGCGGCGGTTTAGTAGACGGCGCGGTTATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTACTGTACGTTTCCGGTGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTAGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCAGG
TTCCGTGTCGCAAGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTTGGCGCGGCAAACGAATTGGGCGTGTTCGCCAT
GACCGAAAACGGTTTGAAAGGTGTGTCCAACCCGTCCGCCATTTTCCTCGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTCTGGTCGAAATTCAGGCATTGGTCGATGACGCACACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTTCTCAACCGCCACGGCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTCAACGCCGTCGGCGGCGTCAAAATCGGCGAACCCGCCGCAGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTCGCCTTCGGCGAAATCGGCCTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGAAAAAGAGTTTCCGAATCTAAAAATCTTCGGCGTTTCCAGCCTTCAGGAAGCCATCGAAATCT
GCCGCGATGCGGAAAACTCGGCGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378TWX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

98.698

0.495
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus mitis SK321

47.149

98.915

0.466
  radA Streptococcus pneumoniae TIGR4

46.827

99.132

0.464
  radA Streptococcus pneumoniae D39

46.827

99.132

0.464
  radA Streptococcus pneumoniae Rx1

46.827

99.132

0.464
  radA Streptococcus pneumoniae R6

46.827

99.132

0.464

Multiple sequence alignment