Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV114_RS05195 Genome accession   NZ_CP031251
Coordinates   1069560..1070363 (-) Length   267 a.a.
NCBI ID   WP_003680807.1    Uniprot ID   A0AAW6Y2T7
Organism   Neisseria subflava strain M18660     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064560..1075363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS05185 - 1066736..1068034 (-) 1299 WP_162817328.1 adenylosuccinate synthase -
  DV114_RS05190 - 1068078..1069235 (-) 1158 WP_070608839.1 ATP phosphoribosyltransferase regulatory subunit -
  DV114_RS05195 comL 1069560..1070363 (-) 804 WP_003680807.1 outer membrane protein assembly factor BamD Machinery gene
  DV114_RS05200 rluD 1070362..1071486 (+) 1125 WP_107696893.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV114_RS05205 pgeF 1071567..1072337 (+) 771 WP_107696894.1 peptidoglycan editing factor PgeF -
  DV114_RS05210 lptE 1072458..1072937 (+) 480 WP_003680809.1 LPS assembly lipoprotein LptE -
  DV114_RS05215 holA 1072937..1073938 (+) 1002 WP_107696895.1 DNA polymerase III subunit delta -
  DV114_RS05220 - 1074085..1074504 (+) 420 WP_003746427.1 hypothetical protein -
  DV114_RS05225 - 1074596..1075120 (+) 525 WP_101755200.1 RDD family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31019.98 Da        Isoelectric Point: 8.5345

>NTDB_id=304986 DV114_RS05195 WP_003680807.1 1069560..1070363(-) (comL) [Neisseria subflava strain M18660]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEISVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=304986 DV114_RS05195 WP_003680807.1 1069560..1070363(-) (comL) [Neisseria subflava strain M18660]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTTCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAGCGTATGGCCAAGCTGGTGGACGCTTTGGGTGGTAACGAGATATCTGTGGCACGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTACG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCATACAAAAAACTGGACAAGCCGCAACTTGCTGCCGATACACGCCGTGTT
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
CTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873

Multiple sequence alignment