Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   DV114_RS01955 Genome accession   NZ_CP031251
Coordinates   395785..397824 (+) Length   679 a.a.
NCBI ID   WP_114926515.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 390785..402824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS01940 grxC 391516..391773 (+) 258 WP_003684090.1 glutaredoxin 3 -
  DV114_RS01945 secB 391795..392229 (+) 435 WP_003745844.1 protein-export chaperone SecB -
  DV114_RS01950 - 392492..395536 (+) 3045 WP_114926514.1 TonB-dependent receptor -
  DV114_RS01955 recG 395785..397824 (+) 2040 WP_114926515.1 ATP-dependent DNA helicase RecG Machinery gene
  DV114_RS01960 gdhA 397894..399228 (-) 1335 WP_003745850.1 NADP-specific glutamate dehydrogenase -
  DV114_RS01965 - 399643..400437 (+) 795 WP_114926105.1 thymidylate synthase -

Sequence


Protein


Download         Length: 679 a.a.        Molecular weight: 74989.90 Da        Isoelectric Point: 7.1600

>NTDB_id=304975 DV114_RS01955 WP_114926515.1 395785..397824(+) (recG) [Neisseria subflava strain M18660]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGKVIHQEVTFKPRKQLIVQIA
DGSGSILFLRFIHFYASNQKQMAVGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSAT
ALGGDGTLTQALRHALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGAVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDQLPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCILLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=304975 DV114_RS01955 WP_114926515.1 395785..397824(+) (recG) [Neisseria subflava strain M18660]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCCAAGAAGCTTGAAAAACTCAACCTCCATACTGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCTCCGATCGGCG
TGCCGTGTCAGGTTGAGGGCAAGGTCATTCATCAGGAAGTAACTTTTAAGCCGCGCAAACAGCTGATTGTTCAAATCGCC
GATGGTTCCGGCAGCATCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGGTCGGCAAGCG
CATCCGCGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCACCCTAAAATCCGCGATGCAGAGAGCA
GTGGTTTGGCGGAAAGCCTCACGCCGATTTATCCGACCGTAAACGGTTTAAATCAACCCACTTTGCGCCGTATTATTCAG
ACGGCCTTGGACGTTACGCCGTTGCACGATACATTGCCTGATGCTTTATTAGGCCGTCTGAAACTGCCGCACCTTGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCAAGCTTCACTATTCATCAACTTTCAGACGGCACGCTGCCTGCATGGCAAC
GGCTTAAATTTGACGAACTTTTGGCGCAACAACTTTCCATGCGCTTGGCGCGGCAGAAGCGCGTTAGCGGCTCGGCCACA
GCATTGGGCGGCGACGGTACATTGACTCAAGCCCTGCGTCACGCTTTGCCGTTTGCCCTGACCGATGCACAAGAAAAAGT
TGTTTCCGAAATCTGCCGTGATATGGCGCAAACCCATCCCATGCACCGTCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTTGCCGCCTTGTCTGCTTTGACGGCTATTGAATCCGGCGCACAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCACTTCATCAAGTTCAAACAATGGCTTGAGCCTTTAGGCCTTGAAGTCGTCTGGCTTTCAGGCAGCCAGCG
TAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTGGCTGACGGTGCTGTCAAAATTGCCGTCGGCACGCACGCCCTGTTTT
CAGACGACGTCGAGTTCCAAAATCTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCCTTGCC
CTCAAAAACAAAGGACGAGACGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCACGCACGCTCGCCATGAGTTTCTT
CGCCGATTTGGACGTGTCCGTCATCGACCAGTTGCCGCCCGGGCGCACCCCGATTAAAACCCGCCTCGTCAACAATGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCCACCGAAACCTTAGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAAGCCGCCGAAAAAGCCGAAGTCATGGCGGAATTTGCCGCAGGCCGTCTGAACGTCTTGG
TCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAACGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCATCCTCCTGTTTGCTGAACC
CTTGAGCGAACTCGCCAAAGCGCGGTTAAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCAGACAAGACCTCA
ACATCCGTGGCCCCGGCGAATTTCTCGGCGCGCGTCAAAGCGGCGTTCCCATGCTGCGTTTTGCCAACCTCGAAGAAGAC
CTGCACCTTTTGGAACAGGCACGCGAAATCGCCCCTTTGCTGATTGAACAAAACCCTGAAATCGTCGAAGCGCATTTGGC
AAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.225

100

0.932


Multiple sequence alignment