Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DV114_RS01905 Genome accession   NZ_CP031251
Coordinates   384364..384825 (-) Length   153 a.a.
NCBI ID   WP_101755338.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 379364..389825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS01880 - 379378..380115 (+) 738 WP_101755335.1 toxin-antitoxin system YwqK family antitoxin -
  DV114_RS01885 - 380161..380721 (-) 561 WP_101755336.1 adenine phosphoribosyltransferase -
  DV114_RS01890 gmk 380890..381507 (+) 618 WP_063067948.1 guanylate kinase -
  DV114_RS01895 rpoZ 381561..381767 (+) 207 WP_114926103.1 DNA-directed RNA polymerase subunit omega -
  DV114_RS01900 - 381874..384030 (+) 2157 WP_114926104.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  DV114_RS11280 - 384127..384288 (-) 162 WP_049344044.1 hypothetical protein -
  DV114_RS01905 recX 384364..384825 (-) 462 WP_101755338.1 recombination regulator RecX Regulator
  DV114_RS01910 - 384926..385639 (-) 714 WP_101755339.1 phosphoglycolate phosphatase -
  DV114_RS01915 - 386061..387326 (+) 1266 WP_049331560.1 Glu/Leu/Phe/Val dehydrogenase -
  DV114_RS01920 - 387487..388305 (+) 819 WP_003745836.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  DV114_RS01925 purN 388403..389029 (+) 627 WP_070461396.1 phosphoribosylglycinamide formyltransferase -
  DV114_RS01930 - 389060..389728 (+) 669 WP_101755340.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17905.16 Da        Isoelectric Point: 7.1699

>NTDB_id=304974 DV114_RS01905 WP_101755338.1 384364..384825(-) (recX) [Neisseria subflava strain M18660]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGALRLKQALAQ
QGIDADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGADTIQMALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=304974 DV114_RS01905 WP_101755338.1 384364..384825(-) (recX) [Neisseria subflava strain M18660]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTTGGCTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTACGGTGCGCTCCGCCTCAAGCAAGCTTTGGCGCAA
CAAGGTATCGATGCAGACGACTGTCGGGAGTTCCTACCCGATAGGGAGGACGAGCTGCAAACCGCTATTTCCGTCTTGCG
TAAAAAATTTAAGCAAGAAGCCCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGTG
CCGACACCATTCAGATGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.703

96.732

0.752

Multiple sequence alignment