Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   DV114_RS01140 Genome accession   NZ_CP031251
Coordinates   218117..221416 (+) Length   1099 a.a.
NCBI ID   WP_114926073.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 213117..226416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS01110 comM 213412..214908 (-) 1497 WP_101755250.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV114_RS01115 - 214922..215242 (-) 321 WP_101755251.1 accessory factor UbiK family protein -
  DV114_RS01120 metK 215352..216521 (-) 1170 WP_049351011.1 methionine adenosyltransferase -
  DV114_RS01130 - 216914..217792 (+) 879 WP_070625949.1 lysophospholipid acyltransferase family protein -
  DV114_RS01140 recC 218117..221416 (+) 3300 WP_114926073.1 exodeoxyribonuclease V subunit gamma Machinery gene
  DV114_RS01145 - 221420..221926 (+) 507 WP_101755253.1 thioredoxin family protein -
  DV114_RS01150 lapB 222043..223212 (-) 1170 WP_003684462.1 lipopolysaccharide assembly protein LapB -
  DV114_RS01155 - 223238..223561 (-) 324 WP_101755254.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  DV114_RS01160 ilvE 223774..224772 (+) 999 WP_101755255.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 125148.72 Da        Isoelectric Point: 4.6546

>NTDB_id=304972 DV114_RS01140 WP_114926073.1 218117..221416(+) (recC) [Neisseria subflava strain M18660]
MFYLYQSDRLEALAEMCAHIHQALPLDSVLAQEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLDLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRFFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEEGEAGAQSVLVQVHDADGNPVCVEPDKLLNDGSVKIVVAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEHAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
TVAGLNVHWGWDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
EPANVESWVQRCRDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELSEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPQAEAQPFFREALS
QEEPGKTIHQGELVSFWRNPVKVWLKKNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARSKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDTELIRSNKRPSEPYEAYFDDLVLQGTIGNLYECGRIVFLNQKDNAPNRIARLLEHLIF
CAIAPKSVENRQTYMVSLGQTETYAAIEQQTAKELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYSKKEDWDAALRKAHE
VFNGNKMSKGQKEYTEVKLVFGHSDESPLDEPLFENLVVNLLVPLLTGVAGKTDTTEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=304972 DV114_RS01140 WP_114926073.1 218117..221416(+) (recC) [Neisseria subflava strain M18660]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCCTTGGA
TTCTGTATTGGCGCAGGAAGAAGTGGTGGTGCAGAGCCAGGGGATGCGGCGTTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCTGCCGGTTTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGGATTTGTTCCGCAGCGAGGCGTTTCAGACGGC
CCCGGAATACGAAAACGTGCGCTTGAAGCTGGAAAGTTATTTGCATAGTTCGGCATCGGCGGATTATCAGCTTGCCGGAC
AGATGGCGGATATTTTCGACCAATATTTGGTGTACCGCCCGGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGT
TTGGGCGATGATGAGGATTGGCAGGCGCGGCTGTGGCGTTATTTGGACGATGGCAGCCAATCTGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGCTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTTTTTGTATTCGGCATTTCGACAATGG
CGCCGATGTATTTACAACTGCTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCACTCAATCCGAGCAGCCAA
TATTGGGGCGAGGTTATCGACGAGGCGCAGATTTTGAAAAGGGGTGATGAGGCGGACTTGTCGCAGGCAGGGCATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGACGCGATTTCTTTGATTTTCTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTAATCATGCCGTCTGAACGCTTA
TATCAACAGGAAGAAGGCGAAGCAGGCGCGCAGTCGGTTTTGGTTCAAGTCCACGATGCGGACGGCAATCCAGTGTGTGT
CGAGCCGGACAAGCTGCTGAATGACGGCTCCGTTAAAATCGTCGTGGCGCACAGCCCTTTGCGCGAATTGCAGATTTTGA
AAGAAGAGTTGTCGCTGGTGTTGCAAAACAATCCCGACTGGCAACCGCACGATATTGCCGTTTTGACGCCAAACATCGAG
CCGTACAGCCCGTTTATCGAAGCCGTTTTTGGGCAGGAGCATGCAGGTAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
GAAACTCAGCCGCCGTCAGCCGTTGCTGTATGCTTTGGCGCAAACTTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTGCCTTTGCTGGAAAGCCGGTTGGTGTTGCAACGCTTCGGTTTGAGCGAGGAAGATGTGCCGCTGCTGCATGAG
ACTGTTGCCGGATTGAATGTGCATTGGGGTTGGGACCAAACCATGCGCGAGGGCAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCTGAAGGCGGCAACGGTATGTGGCAGGGTGTGAGCGCGTGGCATA
GTAATGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCTGATATGGCGGCGCAATGGCAA
GAGCCTGCCAATGTGGAAAGCTGGGTGCAGCGTTGCCGCGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCCAAGCAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGCCGCTTTTTGGACAGCGAAAGCCAAGCCGGATTTTTAAGCGGCGGCATCACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTACTGGGTTTGAATGACGGCGATTTCCCGCG
CAATACCAAAGCAGCGGTGTTTGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGATGACGACCGTT
ACCTCTTCCTCGAAGCTTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTCGCGCCGTCTTCGTTAATCAGTGAGCTGCTGGATACCATTGCCGCCATGACGGGGAAAAGCGGGCGTGAGTTGTC
GGAGAAATGGGTGAAACATCATCCTTTGCAGGCTTTTTCGCGCCGTTATTTCCAAAAGGACGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTATGCCGATGCGTTGAACCAACCGCAAGCGGAAGCGCAGCCGTTTTTCCGTGAGGCATTAAGT
CAGGAAGAACCGGGCAAAACCATTCATCAGGGCGAGCTCGTCAGTTTTTGGCGTAACCCTGTCAAAGTTTGGCTGAAGAA
AAATTTAAGCTGGGATCAGCCGTATCTGGACGGCGCATGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGTCGGA
TTGCCGATGCCTATTTGGATGCGCGGAGCAAAGGTGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGTCTG
ATGCCGGTAGGCGAATTGGGCGGTTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTGGATACCGAGTTGATACG
CAGTAACAAAAGGCCGTCTGAACCTTATGAGGCATATTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTACG
AATGTGGCCGCATTGTGTTCCTAAATCAAAAAGACAATGCCCCCAACCGAATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCATTGCCCCTAAATCCGTTGAAAACCGACAAACCTATATGGTCAGCTTGGGGCAGACCGAAACCTATGCCGCCAT
CGAGCAACAAACAGCAAAAGAACTTTTGAAAGAATGGCTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACAGCAAAAAAGAAGATTGGGATGCCGCCTTGAGAAAAGCCCATGAG
GTTTTTAATGGCAATAAAATGAGCAAAGGGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTTGGCCATTCGGACGAGTC
GCCTCTTGATGAGCCGCTATTTGAAAACCTCGTCGTCAATCTGCTTGTGCCGCTTTTGACCGGCGTGGCAGGGAAAACCG
ATACAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(807-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.842

98.089

0.636

Multiple sequence alignment