Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV389_RS01120 Genome accession   NZ_CP031250
Coordinates   227147..227659 (-) Length   170 a.a.
NCBI ID   WP_041175282.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21384     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 222147..232659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV389_RS01105 (DV389_01105) comQ 225453..225740 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  DV389_RS01110 (DV389_01110) comP 225733..226416 (-) 684 WP_114892878.1 DUF2572 family protein Machinery gene
  DV389_RS01115 (DV389_01115) comO 226431..227147 (-) 717 WP_114892879.1 type II secretion system protein J Machinery gene
  DV389_RS01120 (DV389_01120) comN 227147..227659 (-) 513 WP_041175282.1 type II secretion system protein Machinery gene
  DV389_RS01125 (DV389_01125) suhB 227859..228662 (+) 804 WP_114892880.1 inositol-1-monophosphatase -
  DV389_RS01130 (DV389_01130) nrfE 228770..230677 (+) 1908 WP_114892881.1 heme lyase NrfEFG subunit NrfE -
  DV389_RS01135 (DV389_01135) - 230677..231207 (+) 531 WP_114892882.1 DsbE family thiol:disulfide interchange protein -
  DV389_RS01140 (DV389_01140) nrfF 231204..232346 (+) 1143 WP_021034772.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19930.25 Da        Isoelectric Point: 8.7160

>NTDB_id=304938 DV389_RS01120 WP_041175282.1 227147..227659(-) (comN) [Haemophilus influenzae strain M21384]
MQKGMTLVELLIGLAIISIVLSFVVPLWQTDLPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHYIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=304938 DV389_RS01120 WP_041175282.1 227147..227659(-) (comN) [Haemophilus influenzae strain M21384]
ATGCAGAAAGGTATGACATTAGTGGAATTATTAATTGGGTTAGCCATTATCAGCATTGTGCTGAGTTTTGTCGTTCCATT
ATGGCAAACCGATTTACCTAAAACGATTTTAGCTAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATTATATTTATCCGAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGTTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

95.882

100

0.959

Multiple sequence alignment