Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV389_RS01115 Genome accession   NZ_CP031250
Coordinates   226431..227147 (-) Length   238 a.a.
NCBI ID   WP_114892879.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21384     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 221431..232147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV389_RS01095 (DV389_01095) nrdR 221523..221972 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  DV389_RS01100 (DV389_01100) recC 222027..225407 (-) 3381 WP_114892877.1 exodeoxyribonuclease V subunit gamma -
  DV389_RS01105 (DV389_01105) comQ 225453..225740 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  DV389_RS01110 (DV389_01110) comP 225733..226416 (-) 684 WP_114892878.1 DUF2572 family protein Machinery gene
  DV389_RS01115 (DV389_01115) comO 226431..227147 (-) 717 WP_114892879.1 type II secretion system protein J Machinery gene
  DV389_RS01120 (DV389_01120) comN 227147..227659 (-) 513 WP_041175282.1 type II secretion system protein Machinery gene
  DV389_RS01125 (DV389_01125) suhB 227859..228662 (+) 804 WP_114892880.1 inositol-1-monophosphatase -
  DV389_RS01130 (DV389_01130) nrfE 228770..230677 (+) 1908 WP_114892881.1 heme lyase NrfEFG subunit NrfE -
  DV389_RS01135 (DV389_01135) - 230677..231207 (+) 531 WP_114892882.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26679.97 Da        Isoelectric Point: 9.3691

>NTDB_id=304937 DV389_RS01115 WP_114892879.1 226431..227147(-) (comO) [Haemophilus influenzae strain M21384]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAVFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=304937 DV389_RS01115 WP_114892879.1 226431..227147(-) (comO) [Haemophilus influenzae strain M21384]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCGTTTTCATTAGCCAAGAAGATAACGCCCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAACATCAGTTATGAAACATCCCTTGTTGTTGCACTTTGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

100

0.971

Multiple sequence alignment