Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DV378_RS01955 Genome accession   NZ_CP031249
Coordinates   410782..411465 (-) Length   227 a.a.
NCBI ID   WP_050948681.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 405782..416465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS01940 nrdR 406574..407023 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  DV378_RS01945 recC 407085..410456 (-) 3372 WP_050948679.1 exodeoxyribonuclease V subunit gamma -
  DV378_RS01950 comQ 410502..410789 (-) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DV378_RS01955 comP 410782..411465 (-) 684 WP_050948681.1 DUF2572 family protein Machinery gene
  DV378_RS01960 comO 411462..412181 (-) 720 WP_050948682.1 type II secretion system protein J Machinery gene
  DV378_RS01965 comN 412181..412693 (-) 513 WP_050948683.1 type II secretion system protein Machinery gene
  DV378_RS01970 suhB 412893..413696 (+) 804 WP_050948684.1 inositol-1-monophosphatase -
  DV378_RS01975 nrfE 413805..415712 (+) 1908 WP_050948685.1 heme lyase NrfEFG subunit NrfE -
  DV378_RS01980 - 415712..416242 (+) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25456.29 Da        Isoelectric Point: 8.9376

>NTDB_id=304901 DV378_RS01955 WP_050948681.1 410782..411465(-) (comP) [Haemophilus influenzae strain M15895]
MTIQKGIITLTILIFISGLLTAILLLDDSHLSFFRVQQNQRKLYVERTLQLQKMTAAKKQTACLDLPLNNDESVKQISIT
LDGATDSIQYFLWCERMSLFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=304901 DV378_RS01955 WP_050948681.1 410782..411465(-) (comP) [Haemophilus influenzae strain M15895]
ATGACAATACAAAAAGGTATTATCACGCTGACTATTTTGATTTTTATTTCGGGTTTATTAACCGCAATTTTGTTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGTGTGCAACAAAATCAACGAAAACTGTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGCGGCGAAAAAACAAACTGCCTGCCTTGATTTACCGTTAAATAATGATGAAAGTGTGAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACAGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

92.952

100

0.93

Multiple sequence alignment