Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV378_RS01960 Genome accession   NZ_CP031249
Coordinates   411462..412181 (-) Length   239 a.a.
NCBI ID   WP_050948682.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406462..417181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS01940 nrdR 406574..407023 (-) 450 WP_005627362.1 transcriptional regulator NrdR -
  DV378_RS01945 recC 407085..410456 (-) 3372 WP_050948679.1 exodeoxyribonuclease V subunit gamma -
  DV378_RS01950 comQ 410502..410789 (-) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DV378_RS01955 comP 410782..411465 (-) 684 WP_050948681.1 DUF2572 family protein Machinery gene
  DV378_RS01960 comO 411462..412181 (-) 720 WP_050948682.1 type II secretion system protein J Machinery gene
  DV378_RS01965 comN 412181..412693 (-) 513 WP_050948683.1 type II secretion system protein Machinery gene
  DV378_RS01970 suhB 412893..413696 (+) 804 WP_050948684.1 inositol-1-monophosphatase -
  DV378_RS01975 nrfE 413805..415712 (+) 1908 WP_050948685.1 heme lyase NrfEFG subunit NrfE -
  DV378_RS01980 - 415712..416242 (+) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26805.14 Da        Isoelectric Point: 9.5423

>NTDB_id=304902 DV378_RS01960 WP_050948682.1 411462..412181(-) (comO) [Haemophilus influenzae strain M15895]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQASNISYETSIVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=304902 DV378_RS01960 WP_050948682.1 411462..412181(-) (comO) [Haemophilus influenzae strain M15895]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAATCAACACATGCTATTGCATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAGCCTCAAACATCAGTTATGAAACCTCCATTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment