Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV378_RS01965 Genome accession   NZ_CP031249
Coordinates   412181..412693 (-) Length   170 a.a.
NCBI ID   WP_050948683.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407181..417693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS01950 comQ 410502..410789 (-) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DV378_RS01955 comP 410782..411465 (-) 684 WP_050948681.1 DUF2572 family protein Machinery gene
  DV378_RS01960 comO 411462..412181 (-) 720 WP_050948682.1 type II secretion system protein J Machinery gene
  DV378_RS01965 comN 412181..412693 (-) 513 WP_050948683.1 type II secretion system protein Machinery gene
  DV378_RS01970 suhB 412893..413696 (+) 804 WP_050948684.1 inositol-1-monophosphatase -
  DV378_RS01975 nrfE 413805..415712 (+) 1908 WP_050948685.1 heme lyase NrfEFG subunit NrfE -
  DV378_RS01980 - 415712..416242 (+) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -
  DV378_RS01985 nrfF 416239..417393 (+) 1155 WP_050948687.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19822.03 Da        Isoelectric Point: 8.7271

>NTDB_id=304903 DV378_RS01965 WP_050948683.1 412181..412693(-) (comN) [Haemophilus influenzae strain M15895]
MQKGMTLVELLIGLAIISIALSFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=304903 DV378_RS01965 WP_050948683.1 412181..412693(-) (comN) [Haemophilus influenzae strain M15895]
ATGCAAAAAGGTATGACATTAGTGGAATTATTGATTGGATTAGCCATTATCAGCATTGCACTGAGTTTTGCCGTGCCATT
ATGGCAAACAGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGGAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGCGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment