Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DV130_RS05210 Genome accession   NZ_CP031248
Coordinates   991410..992141 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26365     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 986410..997141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS05175 - 986762..986902 (+) 141 Protein_1006 bacteriocin ABC transporter ATP-binding protein -
  DV130_RS05180 blpC 986959..987114 (+) 156 WP_061450964.1 quorum-sensing system pheromone BlpC -
  DV130_RS05185 - 987158..988498 (-) 1341 WP_050073044.1 sensor histidine kinase -
  DV130_RS05190 comE/blpR 988512..989249 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  DV130_RS05195 - 989254..989591 (-) 338 Protein_1010 LytTR family DNA-binding domain-containing protein -
  DV130_RS05200 - 989867..990196 (+) 330 WP_000132572.1 hypothetical protein -
  DV130_RS05205 - 990364..991413 (-) 1050 WP_050088109.1 ABC transporter permease -
  DV130_RS05210 pptA 991410..992141 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DV130_RS05215 - 992209..992619 (+) 411 WP_001278301.1 HIT family protein -
  DV130_RS05220 - 992629..992916 (+) 288 WP_000777760.1 hypothetical protein -
  DV130_RS05225 dnaJ 993296..994432 (-) 1137 WP_050073039.1 molecular chaperone DnaJ -
  DV130_RS05230 - 994834..995181 (-) 348 WP_050073037.1 hypothetical protein -
  DV130_RS05235 dnaK 995192..997015 (-) 1824 WP_000034662.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=304840 DV130_RS05210 WP_000889923.1 991410..992141(-) (pptA) [Streptococcus pneumoniae strain M26365]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=304840 DV130_RS05210 WP_000889923.1 991410..992141(-) (pptA) [Streptococcus pneumoniae strain M26365]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTTTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment