Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   DV129_RS10175 Genome accession   NZ_CP031247
Coordinates   1847750..1848460 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain M23734     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842750..1853460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV129_RS10150 amiF 1843657..1844583 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  DV129_RS12415 - 1845074..1846012 (+) 939 Protein_1860 ABC transporter substrate-binding protein -
  DV129_RS10165 - 1846024..1846901 (+) 878 Protein_1861 ABC transporter permease -
  DV129_RS10170 - 1846914..1847717 (+) 804 WP_000157674.1 ATP-binding cassette domain-containing protein -
  DV129_RS10175 treR 1847750..1848460 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  DV129_RS10180 treP 1848645..1850612 (+) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  DV129_RS10190 treC 1850790..1852415 (+) 1626 WP_000171230.1 alpha,alpha-phosphotrehalase -
  DV129_RS10195 - 1852557..1852805 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=304813 DV129_RS10175 WP_000760673.1 1847750..1848460(-) (treR) [Streptococcus pneumoniae strain M23734]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=304813 DV129_RS10175 WP_000760673.1 1847750..1848460(-) (treR) [Streptococcus pneumoniae strain M23734]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment