Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CCE_RS19785 Genome accession   NC_010546
Coordinates   4325518..4325880 (-) Length   120 a.a.
NCBI ID   WP_009543731.1    Uniprot ID   B1WRV2
Organism   Crocosphaera subtropica ATCC 51142     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4320518..4330880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCE_RS19775 (cce_4193) - 4321329..4324757 (-) 3429 WP_009543733.1 methyl-accepting chemotaxis protein -
  CCE_RS19780 (cce_4194) - 4324932..4325480 (-) 549 WP_009543732.1 chemotaxis protein CheW -
  CCE_RS19785 (cce_4195) pilH 4325518..4325880 (-) 363 WP_009543731.1 response regulator Machinery gene
  CCE_RS19790 (cce_4196) - 4326014..4327219 (-) 1206 WP_009543730.1 response regulator -
  CCE_RS19795 (cce_4197) - 4327346..4327975 (-) 630 WP_009543729.1 hypothetical protein -
  CCE_RS19800 (cce_4198) glp 4328212..4329438 (+) 1227 WP_009543728.1 gephyrin-like molybdotransferase Glp -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13147.29 Da        Isoelectric Point: 4.3611

>NTDB_id=30472 CCE_RS19785 WP_009543731.1 4325518..4325880(-) (pilH) [Crocosphaera subtropica ATCC 51142]
MGTVLVIEDSLTEREIITQYLKIAGITAAIATSGEEALEKLNGELPDLIVLDVVLPGVSGFEICRAIKAEERTSKIPIVI
CSTKDTDMDKFWGKRQGADAYIPKPIDQDIFLNTIKQLIA

Nucleotide


Download         Length: 363 bp        

>NTDB_id=30472 CCE_RS19785 WP_009543731.1 4325518..4325880(-) (pilH) [Crocosphaera subtropica ATCC 51142]
ATGGGAACTGTGCTTGTTATTGAAGATTCTTTAACAGAAAGAGAAATTATTACCCAATATTTAAAAATTGCAGGAATTAC
GGCTGCCATTGCCACCAGTGGAGAAGAAGCCCTAGAAAAATTGAATGGAGAACTTCCGGATCTTATTGTCTTAGATGTGG
TTTTACCAGGAGTCAGTGGCTTTGAAATTTGCCGAGCGATCAAAGCCGAAGAACGCACCAGTAAAATCCCTATCGTTATT
TGTTCGACCAAAGACACGGATATGGACAAATTTTGGGGCAAACGCCAAGGCGCAGACGCTTACATTCCCAAACCCATCGA
TCAAGATATATTCCTTAACACCATTAAACAACTCATTGCCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1WRV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

49.58

99.167

0.492

Multiple sequence alignment