Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV428_RS01195 Genome accession   NZ_CP031243
Coordinates   237157..237810 (-) Length   217 a.a.
NCBI ID   WP_114908400.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19346     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 232157..242810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS01195 sxy/tfoX 237157..237810 (-) 654 WP_114908400.1 DNA transformation protein TfoX Regulator
  DV428_RS01200 recA 238196..239260 (+) 1065 WP_114908401.1 recombinase RecA Machinery gene
  DV428_RS01205 recX 239340..239798 (+) 459 WP_114908402.1 recombination regulator RecX -
  DV428_RS01210 crcB 239795..240181 (-) 387 WP_114908403.1 fluoride efflux transporter CrcB -
  DV428_RS01215 - 240181..240999 (-) 819 WP_114908404.1 Cof-type HAD-IIB family hydrolase -
  DV428_RS01220 hcr 241112..242134 (-) 1023 WP_114908405.1 NADH oxidoreductase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25208.39 Da        Isoelectric Point: 9.9255

>NTDB_id=304556 DV428_RS01195 WP_114908400.1 237157..237810(-) (sxy/tfoX) [Haemophilus haemolyticus strain M19346]
MNIKDEHIDNVCSILDQLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELAIQLSKLGCEPFTTNELNKRFVL
SQYYALSDQVMRNNMLCRKLIILSIQQIRNQKLDRTLRKLNRLKDLPNLTIKHERALIKAGITDVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQFLSQSEKERLLKKLNEILRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304556 DV428_RS01195 WP_114908400.1 237157..237810(-) (sxy/tfoX) [Haemophilus haemolyticus strain M19346]
ATGAATATAAAAGACGAGCATATAGATAATGTTTGCTCTATATTAGATCAGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACAGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAGAATAAAAAACTTTATCTACGTGGCG
AGGATGAACTTGCAATTCAATTAAGTAAATTAGGCTGTGAACCGTTTACAACAAATGAGTTGAATAAGAGATTTGTACTT
TCTCAATATTATGCACTTTCAGATCAGGTGATGCGTAATAATATGTTGTGTAGAAAGTTGATTATTCTTTCTATTCAGCA
AATTCGCAATCAGAAGTTAGATCGCACTTTAAGAAAGCTAAATAGATTAAAGGATTTACCCAATTTAACAATCAAGCACG
AAAGAGCGCTAATAAAAGCTGGCATTACTGATGTTGCTATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGCGGAAGTGGAGCAACTTTAGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAATTTTT
AAGTCAATCGGAAAAAGAGCGTTTATTAAAGAAATTAAACGAAATTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGACGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

90.323

100

0.903

Multiple sequence alignment